Gene : Sobic.007G053800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR30603//PTHR30603:SF14 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGA Genomic Order:  565
Name:  ? Sobic.007G053800 Secondary Identifier:  ? PAC:37935196
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G053800 0.5kb upstream 0.5kb upstream 4205 true Chr07: 5434470-5438674 Sorghum bicolor
Sobic.007G053800 0.5kb upstream 0.5kb upstream 500 false Chr07: 5434470-5434969 Sorghum bicolor
Sobic.007G053800 0.5kb downstream 0.5kb downstream 4205 true Chr07: 5434970-5439174 Sorghum bicolor
Sobic.007G053800 0.5kb downstream 0.5kb downstream 500 false Chr07: 5438675-5439174 Sorghum bicolor
Sobic.007G053800 1.0kb upstream 1.0kb upstream 4705 true Chr07: 5433970-5438674 Sorghum bicolor
Sobic.007G053800 1.0kb upstream 1.0kb upstream 1000 false Chr07: 5433970-5434969 Sorghum bicolor
Sobic.007G053800 1.0kb downstream 1.0kb downstream 4705 true Chr07: 5434970-5439674 Sorghum bicolor
Sobic.007G053800 1.0kb downstream 1.0kb downstream 1000 false Chr07: 5438675-5439674 Sorghum bicolor
Sobic.007G053800 2.0kb upstream 2.0kb upstream 5705 true Chr07: 5432970-5438674 Sorghum bicolor
Sobic.007G053800 2.0kb upstream 2.0kb upstream 2000 false Chr07: 5432970-5434969 Sorghum bicolor
Sobic.007G053800 2.0kb downstream 2.0kb downstream 5705 true Chr07: 5434970-5440674 Sorghum bicolor
Sobic.007G053800 2.0kb downstream 2.0kb downstream 2000 false Chr07: 5438675-5440674 Sorghum bicolor
Sobic.007G053800 5.0kb upstream 5.0kb upstream 8705 true Chr07: 5429970-5438674 Sorghum bicolor
Sobic.007G053800 5.0kb upstream 5.0kb upstream 5000 false Chr07: 5429970-5434969 Sorghum bicolor
Sobic.007G053800 5.0kb downstream 5.0kb downstream 8705 true Chr07: 5434970-5443674 Sorghum bicolor
Sobic.007G053800 5.0kb downstream 5.0kb downstream 5000 false Chr07: 5438675-5443674 Sorghum bicolor
Sobic.007G053800 10.0kb upstream 10.0kb upstream 13705 true Chr07: 5424970-5438674 Sorghum bicolor
Sobic.007G053800 10.0kb upstream 10.0kb upstream 10000 false Chr07: 5424970-5434969 Sorghum bicolor
Sobic.007G053800 10.0kb downstream 10.0kb downstream 13705 true Chr07: 5434970-5448674 Sorghum bicolor
Sobic.007G053800 10.0kb downstream 10.0kb downstream 10000 false Chr07: 5438675-5448674 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183609 5267 Panicoideae View MSA
124578824 5269 Grass View MSA
122043866 5273 Angiosperm View MSA
121344219 5274 Embryophyte View MSA
123380005 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.666        
cufflinks 69.008     High High
cufflinks 18.143     High  
cufflinks 15.852     High  
cufflinks 2.077        
cufflinks 23.568     High  
cufflinks 37.887     High High
cufflinks 87.4     High High
cufflinks 5.135        
cufflinks 3.215        
cufflinks 0.077     Low Low
cufflinks 0.382        
cufflinks 3.19        
cufflinks 0.03     Low Low
cufflinks 5.635        
cufflinks 38.273     High High
cufflinks 45.658     High High
cufflinks 32.842     High  
cufflinks 39.799     High High
cufflinks 31.61     High  
cufflinks 1.187        
cufflinks 0.05     Low Low
cufflinks 0.167       Low
cufflinks 0.238       Low
cufflinks 40.846     High High
cufflinks 91.788     High High
cufflinks 0.08     Low Low
cufflinks 3.186        
cufflinks 37.304     High High
cufflinks 4.091        

0 Strain