Gene : Sobic.007G041500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12358//PTHR12358:SF37 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  434
Name:  ? Sobic.007G041500 Secondary Identifier:  ? PAC:37935800
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5129 Sorghum bicolor pathologic  
Sbicolor PWY-6483 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G041500 0.5kb upstream 0.5kb upstream 6400 true Chr07: 4070227-4076626 Sorghum bicolor
Sobic.007G041500 0.5kb upstream 0.5kb upstream 500 false Chr07: 4070227-4070726 Sorghum bicolor
Sobic.007G041500 0.5kb downstream 0.5kb downstream 6400 true Chr07: 4070727-4077126 Sorghum bicolor
Sobic.007G041500 0.5kb downstream 0.5kb downstream 500 false Chr07: 4076627-4077126 Sorghum bicolor
Sobic.007G041500 1.0kb upstream 1.0kb upstream 6900 true Chr07: 4069727-4076626 Sorghum bicolor
Sobic.007G041500 1.0kb upstream 1.0kb upstream 1000 false Chr07: 4069727-4070726 Sorghum bicolor
Sobic.007G041500 1.0kb downstream 1.0kb downstream 6900 true Chr07: 4070727-4077626 Sorghum bicolor
Sobic.007G041500 1.0kb downstream 1.0kb downstream 1000 false Chr07: 4076627-4077626 Sorghum bicolor
Sobic.007G041500 2.0kb upstream 2.0kb upstream 7900 true Chr07: 4068727-4076626 Sorghum bicolor
Sobic.007G041500 2.0kb upstream 2.0kb upstream 2000 false Chr07: 4068727-4070726 Sorghum bicolor
Sobic.007G041500 2.0kb downstream 2.0kb downstream 7900 true Chr07: 4070727-4078626 Sorghum bicolor
Sobic.007G041500 2.0kb downstream 2.0kb downstream 2000 false Chr07: 4076627-4078626 Sorghum bicolor
Sobic.007G041500 5.0kb upstream 5.0kb upstream 10900 true Chr07: 4065727-4076626 Sorghum bicolor
Sobic.007G041500 5.0kb upstream 5.0kb upstream 5000 false Chr07: 4065727-4070726 Sorghum bicolor
Sobic.007G041500 5.0kb downstream 5.0kb downstream 10900 true Chr07: 4070727-4081626 Sorghum bicolor
Sobic.007G041500 5.0kb downstream 5.0kb downstream 5000 false Chr07: 4076627-4081626 Sorghum bicolor
Sobic.007G041500 10.0kb upstream 10.0kb upstream 15900 true Chr07: 4060727-4076626 Sorghum bicolor
Sobic.007G041500 10.0kb upstream 10.0kb upstream 10000 false Chr07: 4060727-4070726 Sorghum bicolor
Sobic.007G041500 10.0kb downstream 10.0kb downstream 15900 true Chr07: 4070727-4086626 Sorghum bicolor
Sobic.007G041500 10.0kb downstream 10.0kb downstream 10000 false Chr07: 4076627-4086626 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189104 5267 Panicoideae View MSA
124583970 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.997        
cufflinks 0.143       Low
cufflinks 0.463        
cufflinks 0.894        
cufflinks 0.975        
cufflinks 1.353       High
cufflinks 0.642        
cufflinks 0.38       Low
cufflinks 1.755       High
cufflinks 1.598       High
cufflinks 0.608        
cufflinks 1.207        
cufflinks 1.11        
cufflinks 0.87        
cufflinks 0.946        
cufflinks 0.498        
cufflinks 0.651        
cufflinks 0.614        
cufflinks 0.409       Low
cufflinks 1.09        
cufflinks 1.538       High
cufflinks 0.804        
cufflinks 0.843        
cufflinks 0.828        
cufflinks 0.384       Low
cufflinks 0.209       Low
cufflinks 0.744        
cufflinks 1.285        
cufflinks 0.401       Low
cufflinks 1.093        

0 Strain