Gene : Sobic.007G025400 S. bicolor v3.1.1
Defline:  (1 of 5) K00134 - glyceraldehyde 3-phosphate dehydrogenase (GAPDH, gapA) Genomic Order:  262
Name:  ? Sobic.007G025400 Secondary Identifier:  ? PAC:37935818
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ANAEROFRUCAT-PWY Sorghum bicolor pathologic  
Sbicolor ANAGLYCOLYSIS-PWY Sorghum bicolor pathologic  
Sbicolor GLUCONEO-PWY Sorghum bicolor pathologic  
Sbicolor PWY-1042 Sorghum bicolor pathologic  
Sbicolor PWY-5464 Sorghum bicolor pathologic  
Sbicolor SUCSYN-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G025400 0.5kb upstream 0.5kb upstream 5792 true Chr07: 2311396-2317187 Sorghum bicolor
Sobic.007G025400 0.5kb upstream 0.5kb upstream 500 false Chr07: 2311396-2311895 Sorghum bicolor
Sobic.007G025400 0.5kb downstream 0.5kb downstream 5792 true Chr07: 2311896-2317687 Sorghum bicolor
Sobic.007G025400 0.5kb downstream 0.5kb downstream 500 false Chr07: 2317188-2317687 Sorghum bicolor
Sobic.007G025400 1.0kb upstream 1.0kb upstream 6292 true Chr07: 2310896-2317187 Sorghum bicolor
Sobic.007G025400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 2310896-2311895 Sorghum bicolor
Sobic.007G025400 1.0kb downstream 1.0kb downstream 6292 true Chr07: 2311896-2318187 Sorghum bicolor
Sobic.007G025400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 2317188-2318187 Sorghum bicolor
Sobic.007G025400 2.0kb upstream 2.0kb upstream 7292 true Chr07: 2309896-2317187 Sorghum bicolor
Sobic.007G025400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 2309896-2311895 Sorghum bicolor
Sobic.007G025400 2.0kb downstream 2.0kb downstream 7292 true Chr07: 2311896-2319187 Sorghum bicolor
Sobic.007G025400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 2317188-2319187 Sorghum bicolor
Sobic.007G025400 5.0kb upstream 5.0kb upstream 10292 true Chr07: 2306896-2317187 Sorghum bicolor
Sobic.007G025400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 2306896-2311895 Sorghum bicolor
Sobic.007G025400 5.0kb downstream 5.0kb downstream 10292 true Chr07: 2311896-2322187 Sorghum bicolor
Sobic.007G025400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 2317188-2322187 Sorghum bicolor
Sobic.007G025400 10.0kb upstream 10.0kb upstream 15292 true Chr07: 2301896-2317187 Sorghum bicolor
Sobic.007G025400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 2301896-2311895 Sorghum bicolor
Sobic.007G025400 10.0kb downstream 10.0kb downstream 15292 true Chr07: 2311896-2327187 Sorghum bicolor
Sobic.007G025400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 2317188-2327187 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195561 5267 Panicoideae View MSA
124589376 5269 Grass View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.029     High  
cufflinks 14.329     High  
cufflinks 5.408       Low
cufflinks 6.965        
cufflinks 9.355        
cufflinks 2.365       Low
cufflinks 18.325     High  
cufflinks 14.818     High  
cufflinks 7.668        
cufflinks 10.751        
cufflinks 20.209     High  
cufflinks 16.411     High  
cufflinks 4.733       Low
cufflinks 29.846     High High
cufflinks 9.545        
cufflinks 18.193     High  
cufflinks 21.768     High  
cufflinks 19.793     High  
cufflinks 4.859       Low
cufflinks 10.066        
cufflinks 10.908        
cufflinks 25.805     High High
cufflinks 31.461     High High
cufflinks 33.498     High High
cufflinks 8.784     High  
cufflinks 25.608     High High
cufflinks 12.159     High  
cufflinks 47.936     High High
cufflinks 19.772     High  
cufflinks 9.125        

0 Strain