Gene : Sobic.007G116200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR17204:SF18 - PRE-MRNA-PROCESSING FACTOR 39 Genomic Order:  1220
Name:  ? Sobic.007G116200 Secondary Identifier:  ? PAC:37936162
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G116200 0.5kb upstream 0.5kb upstream 25158 true Chr07: 50294472-50319629 Sorghum bicolor
Sobic.007G116200 0.5kb upstream 0.5kb upstream 500 false Chr07: 50319130-50319629 Sorghum bicolor
Sobic.007G116200 0.5kb downstream 0.5kb downstream 25158 true Chr07: 50293972-50319129 Sorghum bicolor
Sobic.007G116200 0.5kb downstream 0.5kb downstream 500 false Chr07: 50293972-50294471 Sorghum bicolor
Sobic.007G116200 1.0kb upstream 1.0kb upstream 25658 true Chr07: 50294472-50320129 Sorghum bicolor
Sobic.007G116200 1.0kb upstream 1.0kb upstream 1000 false Chr07: 50319130-50320129 Sorghum bicolor
Sobic.007G116200 1.0kb downstream 1.0kb downstream 25658 true Chr07: 50293472-50319129 Sorghum bicolor
Sobic.007G116200 1.0kb downstream 1.0kb downstream 1000 false Chr07: 50293472-50294471 Sorghum bicolor
Sobic.007G116200 2.0kb upstream 2.0kb upstream 26658 true Chr07: 50294472-50321129 Sorghum bicolor
Sobic.007G116200 2.0kb upstream 2.0kb upstream 2000 false Chr07: 50319130-50321129 Sorghum bicolor
Sobic.007G116200 2.0kb downstream 2.0kb downstream 26658 true Chr07: 50292472-50319129 Sorghum bicolor
Sobic.007G116200 2.0kb downstream 2.0kb downstream 2000 false Chr07: 50292472-50294471 Sorghum bicolor
Sobic.007G116200 5.0kb upstream 5.0kb upstream 29658 true Chr07: 50294472-50324129 Sorghum bicolor
Sobic.007G116200 5.0kb upstream 5.0kb upstream 5000 false Chr07: 50319130-50324129 Sorghum bicolor
Sobic.007G116200 5.0kb downstream 5.0kb downstream 29658 true Chr07: 50289472-50319129 Sorghum bicolor
Sobic.007G116200 5.0kb downstream 5.0kb downstream 5000 false Chr07: 50289472-50294471 Sorghum bicolor
Sobic.007G116200 10.0kb upstream 10.0kb upstream 34658 true Chr07: 50294472-50329129 Sorghum bicolor
Sobic.007G116200 10.0kb upstream 10.0kb upstream 10000 false Chr07: 50319130-50329129 Sorghum bicolor
Sobic.007G116200 10.0kb downstream 10.0kb downstream 34658 true Chr07: 50284472-50319129 Sorghum bicolor
Sobic.007G116200 10.0kb downstream 10.0kb downstream 10000 false Chr07: 50284472-50294471 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196224 5267 Panicoideae View MSA
124583168 5269 Grass View MSA
122048891 5273 Angiosperm View MSA
121349849 5274 Embryophyte View MSA
123426942 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.795       Low
cufflinks 1.46        
cufflinks 2.292       High
cufflinks 2.066        
cufflinks 2.216        
cufflinks 2.544       High
cufflinks 1.383        
cufflinks 1.084        
cufflinks 2.699       High
cufflinks 2.107        
cufflinks 1.516        
cufflinks 1.822        
cufflinks 2.301       High
cufflinks 1.109        
cufflinks 2.386       High
cufflinks 1.891        
cufflinks 1.16        
cufflinks 1.118        
cufflinks 3.06       High
cufflinks 1.642        
cufflinks 2.848       High
cufflinks 1.226        
cufflinks 1.211        
cufflinks 1.195        
cufflinks 2.579       High
cufflinks 1.421        
cufflinks 2.082        
cufflinks 0.49       Low
cufflinks 1.154        
cufflinks 2.048        

0 Strain