Gene : Sobic.007G130400 S. bicolor v3.1.1
Defline:  (1 of 2) 5.5.1.19 - Lycopene beta-cyclase Genomic Order:  1364
Name:  ? Sobic.007G130400 Secondary Identifier:  ? PAC:37935627
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CAROTENOID-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5943 Sorghum bicolor pathologic  
Sbicolor PWY-5947 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

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Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.007G130400 0.5kb upstream 0.5kb upstream 8678 true Chr07: 54708234-54716911 Sorghum bicolor
Sobic.007G130400 0.5kb upstream 0.5kb upstream 500 false Chr07: 54708234-54708733 Sorghum bicolor
Sobic.007G130400 0.5kb downstream 0.5kb downstream 8678 true Chr07: 54708734-54717411 Sorghum bicolor
Sobic.007G130400 0.5kb downstream 0.5kb downstream 500 false Chr07: 54716912-54717411 Sorghum bicolor
Sobic.007G130400 1.0kb upstream 1.0kb upstream 9178 true Chr07: 54707734-54716911 Sorghum bicolor
Sobic.007G130400 1.0kb upstream 1.0kb upstream 1000 false Chr07: 54707734-54708733 Sorghum bicolor
Sobic.007G130400 1.0kb downstream 1.0kb downstream 9178 true Chr07: 54708734-54717911 Sorghum bicolor
Sobic.007G130400 1.0kb downstream 1.0kb downstream 1000 false Chr07: 54716912-54717911 Sorghum bicolor
Sobic.007G130400 2.0kb upstream 2.0kb upstream 10178 true Chr07: 54706734-54716911 Sorghum bicolor
Sobic.007G130400 2.0kb upstream 2.0kb upstream 2000 false Chr07: 54706734-54708733 Sorghum bicolor
Sobic.007G130400 2.0kb downstream 2.0kb downstream 10178 true Chr07: 54708734-54718911 Sorghum bicolor
Sobic.007G130400 2.0kb downstream 2.0kb downstream 2000 false Chr07: 54716912-54718911 Sorghum bicolor
Sobic.007G130400 5.0kb upstream 5.0kb upstream 13178 true Chr07: 54703734-54716911 Sorghum bicolor
Sobic.007G130400 5.0kb upstream 5.0kb upstream 5000 false Chr07: 54703734-54708733 Sorghum bicolor
Sobic.007G130400 5.0kb downstream 5.0kb downstream 13178 true Chr07: 54708734-54721911 Sorghum bicolor
Sobic.007G130400 5.0kb downstream 5.0kb downstream 5000 false Chr07: 54716912-54721911 Sorghum bicolor
Sobic.007G130400 10.0kb upstream 10.0kb upstream 18178 true Chr07: 54698734-54716911 Sorghum bicolor
Sobic.007G130400 10.0kb upstream 10.0kb upstream 10000 false Chr07: 54698734-54708733 Sorghum bicolor
Sobic.007G130400 10.0kb downstream 10.0kb downstream 18178 true Chr07: 54708734-54726911 Sorghum bicolor
Sobic.007G130400 10.0kb downstream 10.0kb downstream 10000 false Chr07: 54716912-54726911 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187284 5267 Panicoideae View MSA
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.13       Low
cufflinks 6.147       High
cufflinks 3.019       High
cufflinks 1.253        
cufflinks 0.972        
cufflinks 2.28        
cufflinks 2.197        
cufflinks 3.067       High
cufflinks 0.707        
cufflinks 0.697        
cufflinks 0.296       Low
cufflinks 0.439        
cufflinks 0.664        
cufflinks 0.277       Low
cufflinks 1.281        
cufflinks 3.908       High
cufflinks 1.846        
cufflinks 2.144        
cufflinks 2.381        
cufflinks 1.708        
cufflinks 1.392        
cufflinks 0.28       Low
cufflinks 0.267       Low
cufflinks 0.26       Low
cufflinks 3.878       High
cufflinks 5.782       High
cufflinks 0.408        
cufflinks 0.201       Low
cufflinks 2.464        
cufflinks 1.05        

0 Strain