Gene : Sobic.008G052300 S. bicolor v3.1.1
Defline:  (1 of 4) KOG0978//KOG4593 - E3 ubiquitin ligase involved in syntaxin degradation // Mitotic checkpoint protein MAD1 Genomic Order:  534
Name:  ? Sobic.008G052300 Secondary Identifier:  ? PAC:37926502
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G052300 0.5kb upstream 0.5kb upstream 7741   true Chr08: 5269231-5276971 Sorghum bicolor
Sobic.008G052300 0.5kb upstream 0.5kb upstream 500   false Chr08: 5276472-5276971 Sorghum bicolor
Sobic.008G052300 0.5kb downstream 0.5kb downstream 7741   true Chr08: 5268731-5276471 Sorghum bicolor
Sobic.008G052300 0.5kb downstream 0.5kb downstream 500   false Chr08: 5268731-5269230 Sorghum bicolor
Sobic.008G052300 1.0kb upstream 1.0kb upstream 8241   true Chr08: 5269231-5277471 Sorghum bicolor
Sobic.008G052300 1.0kb upstream 1.0kb upstream 1000   false Chr08: 5276472-5277471 Sorghum bicolor
Sobic.008G052300 1.0kb downstream 1.0kb downstream 8241   true Chr08: 5268231-5276471 Sorghum bicolor
Sobic.008G052300 1.0kb downstream 1.0kb downstream 1000   false Chr08: 5268231-5269230 Sorghum bicolor
Sobic.008G052300 2.0kb upstream 2.0kb upstream 9241   true Chr08: 5269231-5278471 Sorghum bicolor
Sobic.008G052300 2.0kb upstream 2.0kb upstream 2000   false Chr08: 5276472-5278471 Sorghum bicolor
Sobic.008G052300 2.0kb downstream 2.0kb downstream 9241   true Chr08: 5267231-5276471 Sorghum bicolor
Sobic.008G052300 2.0kb downstream 2.0kb downstream 2000   false Chr08: 5267231-5269230 Sorghum bicolor
Sobic.008G052300 5.0kb upstream 5.0kb upstream 12241   true Chr08: 5269231-5281471 Sorghum bicolor
Sobic.008G052300 5.0kb upstream 5.0kb upstream 5000   false Chr08: 5276472-5281471 Sorghum bicolor
Sobic.008G052300 5.0kb downstream 5.0kb downstream 12241   true Chr08: 5264231-5276471 Sorghum bicolor
Sobic.008G052300 5.0kb downstream 5.0kb downstream 5000   false Chr08: 5264231-5269230 Sorghum bicolor
Sobic.008G052300 10.0kb upstream 10.0kb upstream 17241   true Chr08: 5269231-5286471 Sorghum bicolor
Sobic.008G052300 10.0kb upstream 10.0kb upstream 10000   false Chr08: 5276472-5286471 Sorghum bicolor
Sobic.008G052300 10.0kb downstream 10.0kb downstream 17241   true Chr08: 5259231-5276471 Sorghum bicolor
Sobic.008G052300 10.0kb downstream 10.0kb downstream 10000   false Chr08: 5259231-5269230 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185145 5267 Panicoideae View MSA
124568295 5269 Grass View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.377        
cufflinks 0.813       Low
cufflinks 1.042       Low
cufflinks 0.519       Low
cufflinks 4.832       High
cufflinks 2.039        
cufflinks 4.988       High
cufflinks 2.221        
cufflinks 1.563        
cufflinks 1.489        
cufflinks 3.22        
cufflinks 4.631        
cufflinks 1.651        
cufflinks 2.918        
cufflinks 3.114        
cufflinks 1.176       Low
cufflinks 5.281       High
cufflinks 5.307       High
cufflinks 1.339        
cufflinks 5.458       High
cufflinks 9.263       High
cufflinks 2.39        
cufflinks 3.458        
cufflinks 3.338        
cufflinks 0.651       Low
cufflinks 0.839       Low
cufflinks 1.273        
cufflinks 3.703        
cufflinks 5.093       High
cufflinks 3.876        

0 Strain