Gene : Sobic.008G038600 S. bicolor v3.1.1
Defline:  (1 of 1) 4.1.1.20 - Diaminopimelate decarboxylase / Meso-2,6-diaminoheptanedioate carboxy-lyase Genomic Order:  397
Name:  ? Sobic.008G038600 Secondary Identifier:  ? PAC:37927615
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5097 Sorghum bicolor pathologic  
Sbicolor PWY-724 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.008G038600 0.5kb upstream 0.5kb upstream 8827   true Chr08: 3639304-3648130 Sorghum bicolor
Sobic.008G038600 0.5kb upstream 0.5kb upstream 500   false Chr08: 3647631-3648130 Sorghum bicolor
Sobic.008G038600 0.5kb downstream 0.5kb downstream 8827   true Chr08: 3638804-3647630 Sorghum bicolor
Sobic.008G038600 0.5kb downstream 0.5kb downstream 500   false Chr08: 3638804-3639303 Sorghum bicolor
Sobic.008G038600 1.0kb upstream 1.0kb upstream 9327   true Chr08: 3639304-3648630 Sorghum bicolor
Sobic.008G038600 1.0kb upstream 1.0kb upstream 1000   false Chr08: 3647631-3648630 Sorghum bicolor
Sobic.008G038600 1.0kb downstream 1.0kb downstream 9327   true Chr08: 3638304-3647630 Sorghum bicolor
Sobic.008G038600 1.0kb downstream 1.0kb downstream 1000   false Chr08: 3638304-3639303 Sorghum bicolor
Sobic.008G038600 2.0kb upstream 2.0kb upstream 10327   true Chr08: 3639304-3649630 Sorghum bicolor
Sobic.008G038600 2.0kb upstream 2.0kb upstream 2000   false Chr08: 3647631-3649630 Sorghum bicolor
Sobic.008G038600 2.0kb downstream 2.0kb downstream 10327   true Chr08: 3637304-3647630 Sorghum bicolor
Sobic.008G038600 2.0kb downstream 2.0kb downstream 2000   false Chr08: 3637304-3639303 Sorghum bicolor
Sobic.008G038600 5.0kb upstream 5.0kb upstream 13327   true Chr08: 3639304-3652630 Sorghum bicolor
Sobic.008G038600 5.0kb upstream 5.0kb upstream 5000   false Chr08: 3647631-3652630 Sorghum bicolor
Sobic.008G038600 5.0kb downstream 5.0kb downstream 13327   true Chr08: 3634304-3647630 Sorghum bicolor
Sobic.008G038600 5.0kb downstream 5.0kb downstream 5000   false Chr08: 3634304-3639303 Sorghum bicolor
Sobic.008G038600 10.0kb upstream 10.0kb upstream 18327   true Chr08: 3639304-3657630 Sorghum bicolor
Sobic.008G038600 10.0kb upstream 10.0kb upstream 10000   false Chr08: 3647631-3657630 Sorghum bicolor
Sobic.008G038600 10.0kb downstream 10.0kb downstream 18327   true Chr08: 3629304-3647630 Sorghum bicolor
Sobic.008G038600 10.0kb downstream 10.0kb downstream 10000   false Chr08: 3629304-3639303 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193306 5267 Panicoideae View MSA
124571113 5269 Grass View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.835     High High
cufflinks 1.944       Low
cufflinks 4.344       Low
cufflinks 6.6        
cufflinks 9.904        
cufflinks 6.401        
cufflinks 11.048        
cufflinks 5.409        
cufflinks 9.184        
cufflinks 10.798        
cufflinks 10.386        
cufflinks 9.004        
cufflinks 6.16        
cufflinks 8.526        
cufflinks 6.267        
cufflinks 3.441       Low
cufflinks 11.146        
cufflinks 12.956     High  
cufflinks 3.616       Low
cufflinks 10.08        
cufflinks 12.704        
cufflinks 13.314     High  
cufflinks 11.036        
cufflinks 11.86     High  
cufflinks 2.788       Low
cufflinks 1.499       Low
cufflinks 7.163        
cufflinks 6.209        
cufflinks 19.573     High High
cufflinks 8.984        

0 Strain