Gene : HORVU5Hr1G004630 H. vulgare r1
Defline:  (1 of 3) K02703 - photosystem II P680 reaction center D1 protein (psbA) Genomic Order:  170
Name:  ? HORVU5Hr1G004630 Secondary Identifier:  ? PAC:38436412
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Hvulgare PHOTOALL-PWY Hordeum vulgare pathologic  
Hvulgare PWY-101 Hordeum vulgare pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
HORVU5Hr1G004630 0.5kb upstream 0.5kb upstream 2073 true chr5H: 8248432-8250504 Hordeum vulgare
HORVU5Hr1G004630 0.5kb upstream 0.5kb upstream 500 false chr5H: 8248432-8248931 Hordeum vulgare
HORVU5Hr1G004630 0.5kb downstream 0.5kb downstream 2073 true chr5H: 8248932-8251004 Hordeum vulgare
HORVU5Hr1G004630 0.5kb downstream 0.5kb downstream 500 false chr5H: 8250505-8251004 Hordeum vulgare
HORVU5Hr1G004630 1.0kb upstream 1.0kb upstream 2573 true chr5H: 8247932-8250504 Hordeum vulgare
HORVU5Hr1G004630 1.0kb upstream 1.0kb upstream 1000 false chr5H: 8247932-8248931 Hordeum vulgare
HORVU5Hr1G004630 1.0kb downstream 1.0kb downstream 2573 true chr5H: 8248932-8251504 Hordeum vulgare
HORVU5Hr1G004630 1.0kb downstream 1.0kb downstream 1000 false chr5H: 8250505-8251504 Hordeum vulgare
HORVU5Hr1G004630 2.0kb upstream 2.0kb upstream 3573 true chr5H: 8246932-8250504 Hordeum vulgare
HORVU5Hr1G004630 2.0kb upstream 2.0kb upstream 2000 false chr5H: 8246932-8248931 Hordeum vulgare
HORVU5Hr1G004630 2.0kb downstream 2.0kb downstream 3573 true chr5H: 8248932-8252504 Hordeum vulgare
HORVU5Hr1G004630 2.0kb downstream 2.0kb downstream 2000 false chr5H: 8250505-8252504 Hordeum vulgare
HORVU5Hr1G004630 5.0kb upstream 5.0kb upstream 6573 true chr5H: 8243932-8250504 Hordeum vulgare
HORVU5Hr1G004630 5.0kb upstream 5.0kb upstream 5000 false chr5H: 8243932-8248931 Hordeum vulgare
HORVU5Hr1G004630 5.0kb downstream 5.0kb downstream 6573 true chr5H: 8248932-8255504 Hordeum vulgare
HORVU5Hr1G004630 5.0kb downstream 5.0kb downstream 5000 false chr5H: 8250505-8255504 Hordeum vulgare
HORVU5Hr1G004630 10.0kb upstream 10.0kb upstream 11573 true chr5H: 8238932-8250504 Hordeum vulgare
HORVU5Hr1G004630 10.0kb upstream 10.0kb upstream 10000 false chr5H: 8238932-8248931 Hordeum vulgare
HORVU5Hr1G004630 10.0kb downstream 10.0kb downstream 11573 true chr5H: 8248932-8260504 Hordeum vulgare
HORVU5Hr1G004630 10.0kb downstream 10.0kb downstream 10000 false chr5H: 8250505-8260504 Hordeum vulgare

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124567831 5269 Grass View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain