Gene : Lsat_1_v5_gn_0_21980 L. sativa V8
Defline:  (1 of 2) PTHR10857//PTHR10857:SF34 - COPINE // COPINE (CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING PROTEIN) FAMILY PROTEIN Genomic Order:  436
Name:  ? Lsat_1_v5_gn_0_21980 Secondary Identifier:  ? PAC:38935982
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_0_21980 0.5kb upstream 0.5kb upstream 4848   true Lsat_1_v8_lg_0: 49083826-49088673 Lactuca sativa
Lsat_1_v5_gn_0_21980 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_0: 49083826-49084325 Lactuca sativa
Lsat_1_v5_gn_0_21980 0.5kb downstream 0.5kb downstream 4848   true Lsat_1_v8_lg_0: 49084326-49089173 Lactuca sativa
Lsat_1_v5_gn_0_21980 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_0: 49088674-49089173 Lactuca sativa
Lsat_1_v5_gn_0_21980 1.0kb upstream 1.0kb upstream 5348   true Lsat_1_v8_lg_0: 49083326-49088673 Lactuca sativa
Lsat_1_v5_gn_0_21980 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_0: 49083326-49084325 Lactuca sativa
Lsat_1_v5_gn_0_21980 1.0kb downstream 1.0kb downstream 5348   true Lsat_1_v8_lg_0: 49084326-49089673 Lactuca sativa
Lsat_1_v5_gn_0_21980 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_0: 49088674-49089673 Lactuca sativa
Lsat_1_v5_gn_0_21980 2.0kb upstream 2.0kb upstream 6348   true Lsat_1_v8_lg_0: 49082326-49088673 Lactuca sativa
Lsat_1_v5_gn_0_21980 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_0: 49082326-49084325 Lactuca sativa
Lsat_1_v5_gn_0_21980 2.0kb downstream 2.0kb downstream 6348   true Lsat_1_v8_lg_0: 49084326-49090673 Lactuca sativa
Lsat_1_v5_gn_0_21980 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_0: 49088674-49090673 Lactuca sativa
Lsat_1_v5_gn_0_21980 5.0kb upstream 5.0kb upstream 9348   true Lsat_1_v8_lg_0: 49079326-49088673 Lactuca sativa
Lsat_1_v5_gn_0_21980 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_0: 49079326-49084325 Lactuca sativa
Lsat_1_v5_gn_0_21980 5.0kb downstream 5.0kb downstream 9348   true Lsat_1_v8_lg_0: 49084326-49093673 Lactuca sativa
Lsat_1_v5_gn_0_21980 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_0: 49088674-49093673 Lactuca sativa
Lsat_1_v5_gn_0_21980 10.0kb upstream 10.0kb upstream 14348   true Lsat_1_v8_lg_0: 49074326-49088673 Lactuca sativa
Lsat_1_v5_gn_0_21980 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_0: 49074326-49084325 Lactuca sativa
Lsat_1_v5_gn_0_21980 10.0kb downstream 10.0kb downstream 14348   true Lsat_1_v8_lg_0: 49084326-49098673 Lactuca sativa
Lsat_1_v5_gn_0_21980 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_0: 49088674-49098673 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121752866 5273 Angiosperm Singleton cluster - no MSA
121440488 5263 Asterids Singleton cluster - no MSA
123709771 5271 Pentapetalae Singleton cluster - no MSA
122743473 5272 Eudicot Singleton cluster - no MSA
121024563 5274 Embryophyte Singleton cluster - no MSA
123064692 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain