Gene : Lsat_1_v5_gn_1_12980 L. sativa V8
Defline:  (1 of 2) PTHR15561//PTHR15561:SF0 - CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN // DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC9 Genomic Order:  413
Name:  ? Lsat_1_v5_gn_1_12980 Secondary Identifier:  ? PAC:38943176
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_12980 0.5kb upstream 0.5kb upstream 1859   true Lsat_1_v8_lg_1: 14497349-14499207 Lactuca sativa
Lsat_1_v5_gn_1_12980 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 14497349-14497848 Lactuca sativa
Lsat_1_v5_gn_1_12980 0.5kb downstream 0.5kb downstream 1859   true Lsat_1_v8_lg_1: 14497849-14499707 Lactuca sativa
Lsat_1_v5_gn_1_12980 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 14499208-14499707 Lactuca sativa
Lsat_1_v5_gn_1_12980 1.0kb upstream 1.0kb upstream 2359   true Lsat_1_v8_lg_1: 14496849-14499207 Lactuca sativa
Lsat_1_v5_gn_1_12980 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 14496849-14497848 Lactuca sativa
Lsat_1_v5_gn_1_12980 1.0kb downstream 1.0kb downstream 2359   true Lsat_1_v8_lg_1: 14497849-14500207 Lactuca sativa
Lsat_1_v5_gn_1_12980 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 14499208-14500207 Lactuca sativa
Lsat_1_v5_gn_1_12980 2.0kb upstream 2.0kb upstream 3359   true Lsat_1_v8_lg_1: 14495849-14499207 Lactuca sativa
Lsat_1_v5_gn_1_12980 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 14495849-14497848 Lactuca sativa
Lsat_1_v5_gn_1_12980 2.0kb downstream 2.0kb downstream 3359   true Lsat_1_v8_lg_1: 14497849-14501207 Lactuca sativa
Lsat_1_v5_gn_1_12980 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 14499208-14501207 Lactuca sativa
Lsat_1_v5_gn_1_12980 5.0kb upstream 5.0kb upstream 6359   true Lsat_1_v8_lg_1: 14492849-14499207 Lactuca sativa
Lsat_1_v5_gn_1_12980 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 14492849-14497848 Lactuca sativa
Lsat_1_v5_gn_1_12980 5.0kb downstream 5.0kb downstream 6359   true Lsat_1_v8_lg_1: 14497849-14504207 Lactuca sativa
Lsat_1_v5_gn_1_12980 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 14499208-14504207 Lactuca sativa
Lsat_1_v5_gn_1_12980 10.0kb upstream 10.0kb upstream 11359   true Lsat_1_v8_lg_1: 14487849-14499207 Lactuca sativa
Lsat_1_v5_gn_1_12980 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 14487849-14497848 Lactuca sativa
Lsat_1_v5_gn_1_12980 10.0kb downstream 10.0kb downstream 11359   true Lsat_1_v8_lg_1: 14497849-14509207 Lactuca sativa
Lsat_1_v5_gn_1_12980 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 14499208-14509207 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477043 5263 Asterids View MSA
123740278 5271 Pentapetalae View MSA
122796140 5272 Eudicot View MSA
122047210 5273 Angiosperm View MSA
121347420 5274 Embryophyte View MSA
123427400 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain