Gene : Lsat_1_v5_gn_1_27981 L. sativa V8
Defline:  (1 of 5) K02707 - photosystem II cytochrome b559 subunit alpha (psbE) Genomic Order:  925
Name:  ? Lsat_1_v5_gn_1_27981 Secondary Identifier:  ? PAC:38944161
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_27981 0.5kb upstream 0.5kb upstream 1302   true Lsat_1_v8_lg_1: 31621369-31622670 Lactuca sativa
Lsat_1_v5_gn_1_27981 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 31621369-31621868 Lactuca sativa
Lsat_1_v5_gn_1_27981 0.5kb downstream 0.5kb downstream 1302   true Lsat_1_v8_lg_1: 31621869-31623170 Lactuca sativa
Lsat_1_v5_gn_1_27981 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 31622671-31623170 Lactuca sativa
Lsat_1_v5_gn_1_27981 1.0kb upstream 1.0kb upstream 1802   true Lsat_1_v8_lg_1: 31620869-31622670 Lactuca sativa
Lsat_1_v5_gn_1_27981 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 31620869-31621868 Lactuca sativa
Lsat_1_v5_gn_1_27981 1.0kb downstream 1.0kb downstream 1802   true Lsat_1_v8_lg_1: 31621869-31623670 Lactuca sativa
Lsat_1_v5_gn_1_27981 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 31622671-31623670 Lactuca sativa
Lsat_1_v5_gn_1_27981 2.0kb upstream 2.0kb upstream 2802   true Lsat_1_v8_lg_1: 31619869-31622670 Lactuca sativa
Lsat_1_v5_gn_1_27981 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 31619869-31621868 Lactuca sativa
Lsat_1_v5_gn_1_27981 2.0kb downstream 2.0kb downstream 2802   true Lsat_1_v8_lg_1: 31621869-31624670 Lactuca sativa
Lsat_1_v5_gn_1_27981 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 31622671-31624670 Lactuca sativa
Lsat_1_v5_gn_1_27981 5.0kb upstream 5.0kb upstream 5802   true Lsat_1_v8_lg_1: 31616869-31622670 Lactuca sativa
Lsat_1_v5_gn_1_27981 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 31616869-31621868 Lactuca sativa
Lsat_1_v5_gn_1_27981 5.0kb downstream 5.0kb downstream 5802   true Lsat_1_v8_lg_1: 31621869-31627670 Lactuca sativa
Lsat_1_v5_gn_1_27981 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 31622671-31627670 Lactuca sativa
Lsat_1_v5_gn_1_27981 10.0kb upstream 10.0kb upstream 10802   true Lsat_1_v8_lg_1: 31611869-31622670 Lactuca sativa
Lsat_1_v5_gn_1_27981 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 31611869-31621868 Lactuca sativa
Lsat_1_v5_gn_1_27981 10.0kb downstream 10.0kb downstream 10802   true Lsat_1_v8_lg_1: 31621869-31632670 Lactuca sativa
Lsat_1_v5_gn_1_27981 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 31622671-31632670 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027002 5273 Angiosperm View MSA
121452286 5263 Asterids View MSA
123750907 5271 Pentapetalae View MSA
122797055 5272 Eudicot View MSA
121296728 5274 Embryophyte View MSA
123424436 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain