Gene : Lsat_1_v5_gn_1_49160 L. sativa V8
Defline:  (1 of 200) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1609
Name:  ? Lsat_1_v5_gn_1_49160 Secondary Identifier:  ? PAC:38946078
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_49160 0.5kb upstream 0.5kb upstream 3348   true Lsat_1_v8_lg_1: 54862017-54865364 Lactuca sativa
Lsat_1_v5_gn_1_49160 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 54864865-54865364 Lactuca sativa
Lsat_1_v5_gn_1_49160 0.5kb downstream 0.5kb downstream 3348   true Lsat_1_v8_lg_1: 54861517-54864864 Lactuca sativa
Lsat_1_v5_gn_1_49160 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 54861517-54862016 Lactuca sativa
Lsat_1_v5_gn_1_49160 1.0kb upstream 1.0kb upstream 3848   true Lsat_1_v8_lg_1: 54862017-54865864 Lactuca sativa
Lsat_1_v5_gn_1_49160 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 54864865-54865864 Lactuca sativa
Lsat_1_v5_gn_1_49160 1.0kb downstream 1.0kb downstream 3848   true Lsat_1_v8_lg_1: 54861017-54864864 Lactuca sativa
Lsat_1_v5_gn_1_49160 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 54861017-54862016 Lactuca sativa
Lsat_1_v5_gn_1_49160 2.0kb upstream 2.0kb upstream 4848   true Lsat_1_v8_lg_1: 54862017-54866864 Lactuca sativa
Lsat_1_v5_gn_1_49160 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 54864865-54866864 Lactuca sativa
Lsat_1_v5_gn_1_49160 2.0kb downstream 2.0kb downstream 4848   true Lsat_1_v8_lg_1: 54860017-54864864 Lactuca sativa
Lsat_1_v5_gn_1_49160 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 54860017-54862016 Lactuca sativa
Lsat_1_v5_gn_1_49160 5.0kb upstream 5.0kb upstream 7848   true Lsat_1_v8_lg_1: 54862017-54869864 Lactuca sativa
Lsat_1_v5_gn_1_49160 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 54864865-54869864 Lactuca sativa
Lsat_1_v5_gn_1_49160 5.0kb downstream 5.0kb downstream 7848   true Lsat_1_v8_lg_1: 54857017-54864864 Lactuca sativa
Lsat_1_v5_gn_1_49160 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 54857017-54862016 Lactuca sativa
Lsat_1_v5_gn_1_49160 10.0kb upstream 10.0kb upstream 12848   true Lsat_1_v8_lg_1: 54862017-54874864 Lactuca sativa
Lsat_1_v5_gn_1_49160 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 54864865-54874864 Lactuca sativa
Lsat_1_v5_gn_1_49160 10.0kb downstream 10.0kb downstream 12848   true Lsat_1_v8_lg_1: 54852017-54864864 Lactuca sativa
Lsat_1_v5_gn_1_49160 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 54852017-54862016 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469622 5263 Asterids View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain