Gene : Lsat_1_v5_gn_1_40420 L. sativa V8
Defline:  (1 of 62) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1372
Name:  ? Lsat_1_v5_gn_1_40420 Secondary Identifier:  ? PAC:38947036
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-1081 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_40420 0.5kb upstream 0.5kb upstream 3053   true Lsat_1_v8_lg_1: 45887014-45890066 Lactuca sativa
Lsat_1_v5_gn_1_40420 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 45889567-45890066 Lactuca sativa
Lsat_1_v5_gn_1_40420 0.5kb downstream 0.5kb downstream 3053   true Lsat_1_v8_lg_1: 45886514-45889566 Lactuca sativa
Lsat_1_v5_gn_1_40420 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 45886514-45887013 Lactuca sativa
Lsat_1_v5_gn_1_40420 1.0kb upstream 1.0kb upstream 3553   true Lsat_1_v8_lg_1: 45887014-45890566 Lactuca sativa
Lsat_1_v5_gn_1_40420 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 45889567-45890566 Lactuca sativa
Lsat_1_v5_gn_1_40420 1.0kb downstream 1.0kb downstream 3553   true Lsat_1_v8_lg_1: 45886014-45889566 Lactuca sativa
Lsat_1_v5_gn_1_40420 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 45886014-45887013 Lactuca sativa
Lsat_1_v5_gn_1_40420 2.0kb upstream 2.0kb upstream 4553   true Lsat_1_v8_lg_1: 45887014-45891566 Lactuca sativa
Lsat_1_v5_gn_1_40420 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 45889567-45891566 Lactuca sativa
Lsat_1_v5_gn_1_40420 2.0kb downstream 2.0kb downstream 4553   true Lsat_1_v8_lg_1: 45885014-45889566 Lactuca sativa
Lsat_1_v5_gn_1_40420 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 45885014-45887013 Lactuca sativa
Lsat_1_v5_gn_1_40420 5.0kb upstream 5.0kb upstream 7553   true Lsat_1_v8_lg_1: 45887014-45894566 Lactuca sativa
Lsat_1_v5_gn_1_40420 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 45889567-45894566 Lactuca sativa
Lsat_1_v5_gn_1_40420 5.0kb downstream 5.0kb downstream 7553   true Lsat_1_v8_lg_1: 45882014-45889566 Lactuca sativa
Lsat_1_v5_gn_1_40420 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 45882014-45887013 Lactuca sativa
Lsat_1_v5_gn_1_40420 10.0kb upstream 10.0kb upstream 12553   true Lsat_1_v8_lg_1: 45887014-45899566 Lactuca sativa
Lsat_1_v5_gn_1_40420 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 45889567-45899566 Lactuca sativa
Lsat_1_v5_gn_1_40420 10.0kb downstream 10.0kb downstream 12553   true Lsat_1_v8_lg_1: 45877014-45889566 Lactuca sativa
Lsat_1_v5_gn_1_40420 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 45877014-45887013 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466684 5263 Asterids View MSA
123736627 5271 Pentapetalae View MSA
122795582 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain