Gene : Lsat_1_v5_gn_1_72341 L. sativa V8
Defline:  (1 of 1) PTHR22594//PTHR22594:SF33 - ASPARTYL/LYSYL-TRNA SYNTHETASE // ASPARTATE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  2428
Name:  ? Lsat_1_v5_gn_1_72341 Secondary Identifier:  ? PAC:38944346
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_72341 0.5kb upstream 0.5kb upstream 4971   true Lsat_1_v8_lg_1: 87282494-87287464 Lactuca sativa
Lsat_1_v5_gn_1_72341 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 87286965-87287464 Lactuca sativa
Lsat_1_v5_gn_1_72341 0.5kb downstream 0.5kb downstream 4971   true Lsat_1_v8_lg_1: 87281994-87286964 Lactuca sativa
Lsat_1_v5_gn_1_72341 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 87281994-87282493 Lactuca sativa
Lsat_1_v5_gn_1_72341 1.0kb upstream 1.0kb upstream 5471   true Lsat_1_v8_lg_1: 87282494-87287964 Lactuca sativa
Lsat_1_v5_gn_1_72341 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 87286965-87287964 Lactuca sativa
Lsat_1_v5_gn_1_72341 1.0kb downstream 1.0kb downstream 5471   true Lsat_1_v8_lg_1: 87281494-87286964 Lactuca sativa
Lsat_1_v5_gn_1_72341 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 87281494-87282493 Lactuca sativa
Lsat_1_v5_gn_1_72341 2.0kb upstream 2.0kb upstream 6471   true Lsat_1_v8_lg_1: 87282494-87288964 Lactuca sativa
Lsat_1_v5_gn_1_72341 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 87286965-87288964 Lactuca sativa
Lsat_1_v5_gn_1_72341 2.0kb downstream 2.0kb downstream 6471   true Lsat_1_v8_lg_1: 87280494-87286964 Lactuca sativa
Lsat_1_v5_gn_1_72341 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 87280494-87282493 Lactuca sativa
Lsat_1_v5_gn_1_72341 5.0kb upstream 5.0kb upstream 9471   true Lsat_1_v8_lg_1: 87282494-87291964 Lactuca sativa
Lsat_1_v5_gn_1_72341 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 87286965-87291964 Lactuca sativa
Lsat_1_v5_gn_1_72341 5.0kb downstream 5.0kb downstream 9471   true Lsat_1_v8_lg_1: 87277494-87286964 Lactuca sativa
Lsat_1_v5_gn_1_72341 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 87277494-87282493 Lactuca sativa
Lsat_1_v5_gn_1_72341 10.0kb upstream 10.0kb upstream 14471   true Lsat_1_v8_lg_1: 87282494-87296964 Lactuca sativa
Lsat_1_v5_gn_1_72341 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 87286965-87296964 Lactuca sativa
Lsat_1_v5_gn_1_72341 10.0kb downstream 10.0kb downstream 14471   true Lsat_1_v8_lg_1: 87272494-87286964 Lactuca sativa
Lsat_1_v5_gn_1_72341 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 87272494-87282493 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470389 5263 Asterids View MSA
123746132 5271 Pentapetalae View MSA
122792438 5272 Eudicot View MSA
122047949 5273 Angiosperm View MSA
121349506 5274 Embryophyte View MSA
123428007 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain