Gene : Lsat_1_v5_gn_1_58201 L. sativa V8
Defline:  (1 of 7) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  1917
Name:  ? Lsat_1_v5_gn_1_58201 Secondary Identifier:  ? PAC:38944792
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_1_58201 0.5kb upstream 0.5kb upstream 1992   true Lsat_1_v8_lg_1: 66890044-66892035 Lactuca sativa
Lsat_1_v5_gn_1_58201 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_1: 66890044-66890543 Lactuca sativa
Lsat_1_v5_gn_1_58201 0.5kb downstream 0.5kb downstream 1992   true Lsat_1_v8_lg_1: 66890544-66892535 Lactuca sativa
Lsat_1_v5_gn_1_58201 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_1: 66892036-66892535 Lactuca sativa
Lsat_1_v5_gn_1_58201 1.0kb upstream 1.0kb upstream 2492   true Lsat_1_v8_lg_1: 66889544-66892035 Lactuca sativa
Lsat_1_v5_gn_1_58201 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_1: 66889544-66890543 Lactuca sativa
Lsat_1_v5_gn_1_58201 1.0kb downstream 1.0kb downstream 2492   true Lsat_1_v8_lg_1: 66890544-66893035 Lactuca sativa
Lsat_1_v5_gn_1_58201 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_1: 66892036-66893035 Lactuca sativa
Lsat_1_v5_gn_1_58201 2.0kb upstream 2.0kb upstream 3492   true Lsat_1_v8_lg_1: 66888544-66892035 Lactuca sativa
Lsat_1_v5_gn_1_58201 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_1: 66888544-66890543 Lactuca sativa
Lsat_1_v5_gn_1_58201 2.0kb downstream 2.0kb downstream 3492   true Lsat_1_v8_lg_1: 66890544-66894035 Lactuca sativa
Lsat_1_v5_gn_1_58201 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_1: 66892036-66894035 Lactuca sativa
Lsat_1_v5_gn_1_58201 5.0kb upstream 5.0kb upstream 6492   true Lsat_1_v8_lg_1: 66885544-66892035 Lactuca sativa
Lsat_1_v5_gn_1_58201 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_1: 66885544-66890543 Lactuca sativa
Lsat_1_v5_gn_1_58201 5.0kb downstream 5.0kb downstream 6492   true Lsat_1_v8_lg_1: 66890544-66897035 Lactuca sativa
Lsat_1_v5_gn_1_58201 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_1: 66892036-66897035 Lactuca sativa
Lsat_1_v5_gn_1_58201 10.0kb upstream 10.0kb upstream 11492   true Lsat_1_v8_lg_1: 66880544-66892035 Lactuca sativa
Lsat_1_v5_gn_1_58201 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_1: 66880544-66890543 Lactuca sativa
Lsat_1_v5_gn_1_58201 10.0kb downstream 10.0kb downstream 11492   true Lsat_1_v8_lg_1: 66890544-66902035 Lactuca sativa
Lsat_1_v5_gn_1_58201 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_1: 66892036-66902035 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475763 5263 Asterids View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain