Gene : Lsat_1_v5_gn_2_49000 L. sativa V8
Defline:  (1 of 2) 2.1.1.178 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase Genomic Order:  1237
Name:  ? Lsat_1_v5_gn_2_49000 Secondary Identifier:  ? PAC:38962255
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_49000 0.5kb upstream 0.5kb upstream 5138   true Lsat_1_v8_lg_2: 108002867-108008004 Lactuca sativa
Lsat_1_v5_gn_2_49000 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 108002867-108003366 Lactuca sativa
Lsat_1_v5_gn_2_49000 0.5kb downstream 0.5kb downstream 5138   true Lsat_1_v8_lg_2: 108003367-108008504 Lactuca sativa
Lsat_1_v5_gn_2_49000 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 108008005-108008504 Lactuca sativa
Lsat_1_v5_gn_2_49000 1.0kb upstream 1.0kb upstream 5638   true Lsat_1_v8_lg_2: 108002367-108008004 Lactuca sativa
Lsat_1_v5_gn_2_49000 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 108002367-108003366 Lactuca sativa
Lsat_1_v5_gn_2_49000 1.0kb downstream 1.0kb downstream 5638   true Lsat_1_v8_lg_2: 108003367-108009004 Lactuca sativa
Lsat_1_v5_gn_2_49000 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 108008005-108009004 Lactuca sativa
Lsat_1_v5_gn_2_49000 2.0kb upstream 2.0kb upstream 6638   true Lsat_1_v8_lg_2: 108001367-108008004 Lactuca sativa
Lsat_1_v5_gn_2_49000 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 108001367-108003366 Lactuca sativa
Lsat_1_v5_gn_2_49000 2.0kb downstream 2.0kb downstream 6638   true Lsat_1_v8_lg_2: 108003367-108010004 Lactuca sativa
Lsat_1_v5_gn_2_49000 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 108008005-108010004 Lactuca sativa
Lsat_1_v5_gn_2_49000 5.0kb upstream 5.0kb upstream 9638   true Lsat_1_v8_lg_2: 107998367-108008004 Lactuca sativa
Lsat_1_v5_gn_2_49000 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 107998367-108003366 Lactuca sativa
Lsat_1_v5_gn_2_49000 5.0kb downstream 5.0kb downstream 9638   true Lsat_1_v8_lg_2: 108003367-108013004 Lactuca sativa
Lsat_1_v5_gn_2_49000 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 108008005-108013004 Lactuca sativa
Lsat_1_v5_gn_2_49000 10.0kb upstream 10.0kb upstream 14638   true Lsat_1_v8_lg_2: 107993367-108008004 Lactuca sativa
Lsat_1_v5_gn_2_49000 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 107993367-108003366 Lactuca sativa
Lsat_1_v5_gn_2_49000 10.0kb downstream 10.0kb downstream 14638   true Lsat_1_v8_lg_2: 108003367-108018004 Lactuca sativa
Lsat_1_v5_gn_2_49000 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 108008005-108018004 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473447 5263 Asterids View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain