Gene : Lsat_1_v5_gn_2_71880 L. sativa V8
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  1930
Name:  ? Lsat_1_v5_gn_2_71880 Secondary Identifier:  ? PAC:38961715
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa CAROTENOID-PWY Lactuca sativa pathologic  
Lsativa PWY-6475 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_2_71880 0.5kb upstream 0.5kb upstream 3956   true Lsat_1_v8_lg_2: 145753962-145757917 Lactuca sativa
Lsat_1_v5_gn_2_71880 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_2: 145753962-145754461 Lactuca sativa
Lsat_1_v5_gn_2_71880 0.5kb downstream 0.5kb downstream 3956   true Lsat_1_v8_lg_2: 145754462-145758417 Lactuca sativa
Lsat_1_v5_gn_2_71880 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_2: 145757918-145758417 Lactuca sativa
Lsat_1_v5_gn_2_71880 1.0kb upstream 1.0kb upstream 4456   true Lsat_1_v8_lg_2: 145753462-145757917 Lactuca sativa
Lsat_1_v5_gn_2_71880 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_2: 145753462-145754461 Lactuca sativa
Lsat_1_v5_gn_2_71880 1.0kb downstream 1.0kb downstream 4456   true Lsat_1_v8_lg_2: 145754462-145758917 Lactuca sativa
Lsat_1_v5_gn_2_71880 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_2: 145757918-145758917 Lactuca sativa
Lsat_1_v5_gn_2_71880 2.0kb upstream 2.0kb upstream 5456   true Lsat_1_v8_lg_2: 145752462-145757917 Lactuca sativa
Lsat_1_v5_gn_2_71880 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_2: 145752462-145754461 Lactuca sativa
Lsat_1_v5_gn_2_71880 2.0kb downstream 2.0kb downstream 5456   true Lsat_1_v8_lg_2: 145754462-145759917 Lactuca sativa
Lsat_1_v5_gn_2_71880 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_2: 145757918-145759917 Lactuca sativa
Lsat_1_v5_gn_2_71880 5.0kb upstream 5.0kb upstream 8456   true Lsat_1_v8_lg_2: 145749462-145757917 Lactuca sativa
Lsat_1_v5_gn_2_71880 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_2: 145749462-145754461 Lactuca sativa
Lsat_1_v5_gn_2_71880 5.0kb downstream 5.0kb downstream 8456   true Lsat_1_v8_lg_2: 145754462-145762917 Lactuca sativa
Lsat_1_v5_gn_2_71880 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_2: 145757918-145762917 Lactuca sativa
Lsat_1_v5_gn_2_71880 10.0kb upstream 10.0kb upstream 13456   true Lsat_1_v8_lg_2: 145744462-145757917 Lactuca sativa
Lsat_1_v5_gn_2_71880 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_2: 145744462-145754461 Lactuca sativa
Lsat_1_v5_gn_2_71880 10.0kb downstream 10.0kb downstream 13456   true Lsat_1_v8_lg_2: 145754462-145767917 Lactuca sativa
Lsat_1_v5_gn_2_71880 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_2: 145757918-145767917 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
121480791 5263 Asterids View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain