Gene : Lsat_1_v5_gn_3_34861 L. sativa V8
Defline:  (1 of 5) PTHR12741//PTHR12741:SF16 - LYST-INTERACTING PROTEIN LIP5 DOPAMINE RESPONSIVE PROTEIN DRG-1 // CALLOSE SYNTHASE 7-RELATED Genomic Order:  1131
Name:  ? Lsat_1_v5_gn_3_34861 Secondary Identifier:  ? PAC:38918444
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6773 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_34861 0.5kb upstream 0.5kb upstream 15980   true Lsat_1_v8_lg_3: 46274889-46290868 Lactuca sativa
Lsat_1_v5_gn_3_34861 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 46274889-46275388 Lactuca sativa
Lsat_1_v5_gn_3_34861 0.5kb downstream 0.5kb downstream 15980   true Lsat_1_v8_lg_3: 46275389-46291368 Lactuca sativa
Lsat_1_v5_gn_3_34861 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 46290869-46291368 Lactuca sativa
Lsat_1_v5_gn_3_34861 1.0kb upstream 1.0kb upstream 16480   true Lsat_1_v8_lg_3: 46274389-46290868 Lactuca sativa
Lsat_1_v5_gn_3_34861 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 46274389-46275388 Lactuca sativa
Lsat_1_v5_gn_3_34861 1.0kb downstream 1.0kb downstream 16480   true Lsat_1_v8_lg_3: 46275389-46291868 Lactuca sativa
Lsat_1_v5_gn_3_34861 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 46290869-46291868 Lactuca sativa
Lsat_1_v5_gn_3_34861 2.0kb upstream 2.0kb upstream 17480   true Lsat_1_v8_lg_3: 46273389-46290868 Lactuca sativa
Lsat_1_v5_gn_3_34861 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 46273389-46275388 Lactuca sativa
Lsat_1_v5_gn_3_34861 2.0kb downstream 2.0kb downstream 17480   true Lsat_1_v8_lg_3: 46275389-46292868 Lactuca sativa
Lsat_1_v5_gn_3_34861 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 46290869-46292868 Lactuca sativa
Lsat_1_v5_gn_3_34861 5.0kb upstream 5.0kb upstream 20480   true Lsat_1_v8_lg_3: 46270389-46290868 Lactuca sativa
Lsat_1_v5_gn_3_34861 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 46270389-46275388 Lactuca sativa
Lsat_1_v5_gn_3_34861 5.0kb downstream 5.0kb downstream 20480   true Lsat_1_v8_lg_3: 46275389-46295868 Lactuca sativa
Lsat_1_v5_gn_3_34861 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 46290869-46295868 Lactuca sativa
Lsat_1_v5_gn_3_34861 10.0kb upstream 10.0kb upstream 25480   true Lsat_1_v8_lg_3: 46265389-46290868 Lactuca sativa
Lsat_1_v5_gn_3_34861 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 46265389-46275388 Lactuca sativa
Lsat_1_v5_gn_3_34861 10.0kb downstream 10.0kb downstream 25480   true Lsat_1_v8_lg_3: 46275389-46300868 Lactuca sativa
Lsat_1_v5_gn_3_34861 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 46290869-46300868 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030611 5273 Angiosperm View MSA
121443136 5263 Asterids Singleton cluster - no MSA
123758192 5271 Pentapetalae View MSA
122779173 5272 Eudicot View MSA
121299759 5274 Embryophyte View MSA
123337596 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain