Gene : Lsat_1_v5_gn_3_29341 L. sativa V8
Defline:  (1 of 1) K01933 - phosphoribosylformylglycinamidine cyclo-ligase (purM) Genomic Order:  934
Name:  ? Lsat_1_v5_gn_3_29341 Secondary Identifier:  ? PAC:38919327
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6121 Lactuca sativa pathologic  
Lsativa PWY-841 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_29341 0.5kb upstream 0.5kb upstream 3729   true Lsat_1_v8_lg_3: 39567952-39571680 Lactuca sativa
Lsat_1_v5_gn_3_29341 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 39571181-39571680 Lactuca sativa
Lsat_1_v5_gn_3_29341 0.5kb downstream 0.5kb downstream 3729   true Lsat_1_v8_lg_3: 39567452-39571180 Lactuca sativa
Lsat_1_v5_gn_3_29341 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 39567452-39567951 Lactuca sativa
Lsat_1_v5_gn_3_29341 1.0kb upstream 1.0kb upstream 4229   true Lsat_1_v8_lg_3: 39567952-39572180 Lactuca sativa
Lsat_1_v5_gn_3_29341 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 39571181-39572180 Lactuca sativa
Lsat_1_v5_gn_3_29341 1.0kb downstream 1.0kb downstream 4229   true Lsat_1_v8_lg_3: 39566952-39571180 Lactuca sativa
Lsat_1_v5_gn_3_29341 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 39566952-39567951 Lactuca sativa
Lsat_1_v5_gn_3_29341 2.0kb upstream 2.0kb upstream 5229   true Lsat_1_v8_lg_3: 39567952-39573180 Lactuca sativa
Lsat_1_v5_gn_3_29341 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 39571181-39573180 Lactuca sativa
Lsat_1_v5_gn_3_29341 2.0kb downstream 2.0kb downstream 5229   true Lsat_1_v8_lg_3: 39565952-39571180 Lactuca sativa
Lsat_1_v5_gn_3_29341 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 39565952-39567951 Lactuca sativa
Lsat_1_v5_gn_3_29341 5.0kb upstream 5.0kb upstream 8229   true Lsat_1_v8_lg_3: 39567952-39576180 Lactuca sativa
Lsat_1_v5_gn_3_29341 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 39571181-39576180 Lactuca sativa
Lsat_1_v5_gn_3_29341 5.0kb downstream 5.0kb downstream 8229   true Lsat_1_v8_lg_3: 39562952-39571180 Lactuca sativa
Lsat_1_v5_gn_3_29341 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 39562952-39567951 Lactuca sativa
Lsat_1_v5_gn_3_29341 10.0kb upstream 10.0kb upstream 13229   true Lsat_1_v8_lg_3: 39567952-39581180 Lactuca sativa
Lsat_1_v5_gn_3_29341 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 39571181-39581180 Lactuca sativa
Lsat_1_v5_gn_3_29341 10.0kb downstream 10.0kb downstream 13229   true Lsat_1_v8_lg_3: 39557952-39571180 Lactuca sativa
Lsat_1_v5_gn_3_29341 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 39557952-39567951 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468473 5263 Asterids View MSA
123745564 5271 Pentapetalae View MSA
122789177 5272 Eudicot View MSA
122043371 5273 Angiosperm View MSA
121346228 5274 Embryophyte View MSA
123428592 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain