Gene : Lsat_1_v5_gn_3_84981 L. sativa V8
Defline:  (1 of 9) PTHR30128//PTHR30128:SF8 - OUTER MEMBRANE PROTEIN, OMPA-RELATED // PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1 Genomic Order:  2573
Name:  ? Lsat_1_v5_gn_3_84981 Secondary Identifier:  ? PAC:38916883
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_84981 0.5kb upstream 0.5kb upstream 1248   true Lsat_1_v8_lg_3: 122175992-122177239 Lactuca sativa
Lsat_1_v5_gn_3_84981 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 122176740-122177239 Lactuca sativa
Lsat_1_v5_gn_3_84981 0.5kb downstream 0.5kb downstream 1248   true Lsat_1_v8_lg_3: 122175492-122176739 Lactuca sativa
Lsat_1_v5_gn_3_84981 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 122175492-122175991 Lactuca sativa
Lsat_1_v5_gn_3_84981 1.0kb upstream 1.0kb upstream 1748   true Lsat_1_v8_lg_3: 122175992-122177739 Lactuca sativa
Lsat_1_v5_gn_3_84981 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 122176740-122177739 Lactuca sativa
Lsat_1_v5_gn_3_84981 1.0kb downstream 1.0kb downstream 1748   true Lsat_1_v8_lg_3: 122174992-122176739 Lactuca sativa
Lsat_1_v5_gn_3_84981 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 122174992-122175991 Lactuca sativa
Lsat_1_v5_gn_3_84981 2.0kb upstream 2.0kb upstream 2748   true Lsat_1_v8_lg_3: 122175992-122178739 Lactuca sativa
Lsat_1_v5_gn_3_84981 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 122176740-122178739 Lactuca sativa
Lsat_1_v5_gn_3_84981 2.0kb downstream 2.0kb downstream 2748   true Lsat_1_v8_lg_3: 122173992-122176739 Lactuca sativa
Lsat_1_v5_gn_3_84981 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 122173992-122175991 Lactuca sativa
Lsat_1_v5_gn_3_84981 5.0kb upstream 5.0kb upstream 5748   true Lsat_1_v8_lg_3: 122175992-122181739 Lactuca sativa
Lsat_1_v5_gn_3_84981 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 122176740-122181739 Lactuca sativa
Lsat_1_v5_gn_3_84981 5.0kb downstream 5.0kb downstream 5748   true Lsat_1_v8_lg_3: 122170992-122176739 Lactuca sativa
Lsat_1_v5_gn_3_84981 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 122170992-122175991 Lactuca sativa
Lsat_1_v5_gn_3_84981 10.0kb upstream 10.0kb upstream 10748   true Lsat_1_v8_lg_3: 122175992-122186739 Lactuca sativa
Lsat_1_v5_gn_3_84981 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 122176740-122186739 Lactuca sativa
Lsat_1_v5_gn_3_84981 10.0kb downstream 10.0kb downstream 10748   true Lsat_1_v8_lg_3: 122165992-122176739 Lactuca sativa
Lsat_1_v5_gn_3_84981 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 122165992-122175991 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029302 5273 Angiosperm View MSA
121442880 5263 Asterids Singleton cluster - no MSA
123753251 5271 Pentapetalae View MSA
122775013 5272 Eudicot View MSA
121350541 5274 Embryophyte View MSA
123381782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain