Gene : Lsat_1_v5_gn_3_85260 L. sativa V8
Defline:  (1 of 1) PTHR11540:SF27 - MALATE DEHYDROGENASE, GLYOXYSOMAL-RELATED Genomic Order:  2557
Name:  ? Lsat_1_v5_gn_3_85260 Secondary Identifier:  ? PAC:38916446
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa GLUCONEO-PWY Lactuca sativa pathologic  
Lsativa GLYOXYLATE-BYPASS Lactuca sativa pathologic  
Lsativa PWY-5464 Lactuca sativa pathologic  
Lsativa PWY-561 Lactuca sativa pathologic  
Lsativa PWY-5690 Lactuca sativa pathologic  
Lsativa PWY-7115 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_85260 0.5kb upstream 0.5kb upstream 4602   true Lsat_1_v8_lg_3: 120644209-120648810 Lactuca sativa
Lsat_1_v5_gn_3_85260 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 120648311-120648810 Lactuca sativa
Lsat_1_v5_gn_3_85260 0.5kb downstream 0.5kb downstream 4602   true Lsat_1_v8_lg_3: 120643709-120648310 Lactuca sativa
Lsat_1_v5_gn_3_85260 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 120643709-120644208 Lactuca sativa
Lsat_1_v5_gn_3_85260 1.0kb upstream 1.0kb upstream 5102   true Lsat_1_v8_lg_3: 120644209-120649310 Lactuca sativa
Lsat_1_v5_gn_3_85260 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 120648311-120649310 Lactuca sativa
Lsat_1_v5_gn_3_85260 1.0kb downstream 1.0kb downstream 5102   true Lsat_1_v8_lg_3: 120643209-120648310 Lactuca sativa
Lsat_1_v5_gn_3_85260 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 120643209-120644208 Lactuca sativa
Lsat_1_v5_gn_3_85260 2.0kb upstream 2.0kb upstream 6102   true Lsat_1_v8_lg_3: 120644209-120650310 Lactuca sativa
Lsat_1_v5_gn_3_85260 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 120648311-120650310 Lactuca sativa
Lsat_1_v5_gn_3_85260 2.0kb downstream 2.0kb downstream 6102   true Lsat_1_v8_lg_3: 120642209-120648310 Lactuca sativa
Lsat_1_v5_gn_3_85260 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 120642209-120644208 Lactuca sativa
Lsat_1_v5_gn_3_85260 5.0kb upstream 5.0kb upstream 9102   true Lsat_1_v8_lg_3: 120644209-120653310 Lactuca sativa
Lsat_1_v5_gn_3_85260 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 120648311-120653310 Lactuca sativa
Lsat_1_v5_gn_3_85260 5.0kb downstream 5.0kb downstream 9102   true Lsat_1_v8_lg_3: 120639209-120648310 Lactuca sativa
Lsat_1_v5_gn_3_85260 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 120639209-120644208 Lactuca sativa
Lsat_1_v5_gn_3_85260 10.0kb upstream 10.0kb upstream 14102   true Lsat_1_v8_lg_3: 120644209-120658310 Lactuca sativa
Lsat_1_v5_gn_3_85260 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 120648311-120658310 Lactuca sativa
Lsat_1_v5_gn_3_85260 10.0kb downstream 10.0kb downstream 14102   true Lsat_1_v8_lg_3: 120634209-120648310 Lactuca sativa
Lsat_1_v5_gn_3_85260 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 120634209-120644208 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478903 5263 Asterids View MSA
123748567 5271 Pentapetalae View MSA
122789839 5272 Eudicot View MSA
122041534 5273 Angiosperm View MSA
121344614 5274 Embryophyte View MSA
123426123 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain