Gene : Lsat_1_v5_gn_4_108640 L. sativa V8
Defline:  (1 of 6) 1.3.1.83 - Geranylgeranyl diphosphate reductase / Geranylgeranyl reductase Genomic Order:  3131
Name:  ? Lsat_1_v5_gn_4_108640 Secondary Identifier:  ? PAC:38931445
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5063 Lactuca sativa pathologic  
Lsativa PWY-5064 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_108640 0.5kb upstream 0.5kb upstream 2053   true Lsat_1_v8_lg_4: 188254828-188256880 Lactuca sativa
Lsat_1_v5_gn_4_108640 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 188256381-188256880 Lactuca sativa
Lsat_1_v5_gn_4_108640 0.5kb downstream 0.5kb downstream 2053   true Lsat_1_v8_lg_4: 188254328-188256380 Lactuca sativa
Lsat_1_v5_gn_4_108640 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 188254328-188254827 Lactuca sativa
Lsat_1_v5_gn_4_108640 1.0kb upstream 1.0kb upstream 2553   true Lsat_1_v8_lg_4: 188254828-188257380 Lactuca sativa
Lsat_1_v5_gn_4_108640 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 188256381-188257380 Lactuca sativa
Lsat_1_v5_gn_4_108640 1.0kb downstream 1.0kb downstream 2553   true Lsat_1_v8_lg_4: 188253828-188256380 Lactuca sativa
Lsat_1_v5_gn_4_108640 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 188253828-188254827 Lactuca sativa
Lsat_1_v5_gn_4_108640 2.0kb upstream 2.0kb upstream 3553   true Lsat_1_v8_lg_4: 188254828-188258380 Lactuca sativa
Lsat_1_v5_gn_4_108640 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 188256381-188258380 Lactuca sativa
Lsat_1_v5_gn_4_108640 2.0kb downstream 2.0kb downstream 3553   true Lsat_1_v8_lg_4: 188252828-188256380 Lactuca sativa
Lsat_1_v5_gn_4_108640 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 188252828-188254827 Lactuca sativa
Lsat_1_v5_gn_4_108640 5.0kb upstream 5.0kb upstream 6553   true Lsat_1_v8_lg_4: 188254828-188261380 Lactuca sativa
Lsat_1_v5_gn_4_108640 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 188256381-188261380 Lactuca sativa
Lsat_1_v5_gn_4_108640 5.0kb downstream 5.0kb downstream 6553   true Lsat_1_v8_lg_4: 188249828-188256380 Lactuca sativa
Lsat_1_v5_gn_4_108640 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 188249828-188254827 Lactuca sativa
Lsat_1_v5_gn_4_108640 10.0kb upstream 10.0kb upstream 11553   true Lsat_1_v8_lg_4: 188254828-188266380 Lactuca sativa
Lsat_1_v5_gn_4_108640 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 188256381-188266380 Lactuca sativa
Lsat_1_v5_gn_4_108640 10.0kb downstream 10.0kb downstream 11553   true Lsat_1_v8_lg_4: 188244828-188256380 Lactuca sativa
Lsat_1_v5_gn_4_108640 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 188244828-188254827 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470417 5263 Asterids View MSA
123742493 5271 Pentapetalae View MSA
122794040 5272 Eudicot View MSA
122041542 5273 Angiosperm View MSA
121345615 5274 Embryophyte View MSA
123424772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain