Gene : Lsat_1_v5_gn_4_154680 L. sativa V8
Defline:  (1 of 1) PF12812//PF13180//PF13365 - PDZ-like domain (PDZ_1) // PDZ domain (PDZ_2) // Trypsin-like peptidase domain (Trypsin_2) Genomic Order:  4390
Name:  ? Lsat_1_v5_gn_4_154680 Secondary Identifier:  ? PAC:38933978
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_154680 0.5kb upstream 0.5kb upstream 6721   true Lsat_1_v8_lg_4: 309270891-309277611 Lactuca sativa
Lsat_1_v5_gn_4_154680 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 309277112-309277611 Lactuca sativa
Lsat_1_v5_gn_4_154680 0.5kb downstream 0.5kb downstream 6721   true Lsat_1_v8_lg_4: 309270391-309277111 Lactuca sativa
Lsat_1_v5_gn_4_154680 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 309270391-309270890 Lactuca sativa
Lsat_1_v5_gn_4_154680 1.0kb upstream 1.0kb upstream 7221   true Lsat_1_v8_lg_4: 309270891-309278111 Lactuca sativa
Lsat_1_v5_gn_4_154680 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 309277112-309278111 Lactuca sativa
Lsat_1_v5_gn_4_154680 1.0kb downstream 1.0kb downstream 7221   true Lsat_1_v8_lg_4: 309269891-309277111 Lactuca sativa
Lsat_1_v5_gn_4_154680 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 309269891-309270890 Lactuca sativa
Lsat_1_v5_gn_4_154680 2.0kb upstream 2.0kb upstream 8221   true Lsat_1_v8_lg_4: 309270891-309279111 Lactuca sativa
Lsat_1_v5_gn_4_154680 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 309277112-309279111 Lactuca sativa
Lsat_1_v5_gn_4_154680 2.0kb downstream 2.0kb downstream 8221   true Lsat_1_v8_lg_4: 309268891-309277111 Lactuca sativa
Lsat_1_v5_gn_4_154680 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 309268891-309270890 Lactuca sativa
Lsat_1_v5_gn_4_154680 5.0kb upstream 5.0kb upstream 11221   true Lsat_1_v8_lg_4: 309270891-309282111 Lactuca sativa
Lsat_1_v5_gn_4_154680 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 309277112-309282111 Lactuca sativa
Lsat_1_v5_gn_4_154680 5.0kb downstream 5.0kb downstream 11221   true Lsat_1_v8_lg_4: 309265891-309277111 Lactuca sativa
Lsat_1_v5_gn_4_154680 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 309265891-309270890 Lactuca sativa
Lsat_1_v5_gn_4_154680 10.0kb upstream 10.0kb upstream 16221   true Lsat_1_v8_lg_4: 309270891-309287111 Lactuca sativa
Lsat_1_v5_gn_4_154680 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 309277112-309287111 Lactuca sativa
Lsat_1_v5_gn_4_154680 10.0kb downstream 10.0kb downstream 16221   true Lsat_1_v8_lg_4: 309260891-309277111 Lactuca sativa
Lsat_1_v5_gn_4_154680 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 309260891-309270890 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476609 5263 Asterids View MSA
123749112 5271 Pentapetalae View MSA
122789271 5272 Eudicot View MSA
122042652 5273 Angiosperm View MSA
121347619 5274 Embryophyte View MSA
123428262 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain