Gene : Lsat_1_v5_gn_4_58161 L. sativa V8
Defline:  (1 of 4) PTHR33149:SF1 - PHOTOSYSTEM II D2 PROTEIN Genomic Order:  1695
Name:  ? Lsat_1_v5_gn_4_58161 Secondary Identifier:  ? PAC:38934055
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_58161 0.5kb upstream 0.5kb upstream 1085   true Lsat_1_v8_lg_4: 87242872-87243956 Lactuca sativa
Lsat_1_v5_gn_4_58161 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 87242872-87243371 Lactuca sativa
Lsat_1_v5_gn_4_58161 0.5kb downstream 0.5kb downstream 1085   true Lsat_1_v8_lg_4: 87243372-87244456 Lactuca sativa
Lsat_1_v5_gn_4_58161 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 87243957-87244456 Lactuca sativa
Lsat_1_v5_gn_4_58161 1.0kb upstream 1.0kb upstream 1585   true Lsat_1_v8_lg_4: 87242372-87243956 Lactuca sativa
Lsat_1_v5_gn_4_58161 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 87242372-87243371 Lactuca sativa
Lsat_1_v5_gn_4_58161 1.0kb downstream 1.0kb downstream 1585   true Lsat_1_v8_lg_4: 87243372-87244956 Lactuca sativa
Lsat_1_v5_gn_4_58161 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 87243957-87244956 Lactuca sativa
Lsat_1_v5_gn_4_58161 2.0kb upstream 2.0kb upstream 2585   true Lsat_1_v8_lg_4: 87241372-87243956 Lactuca sativa
Lsat_1_v5_gn_4_58161 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 87241372-87243371 Lactuca sativa
Lsat_1_v5_gn_4_58161 2.0kb downstream 2.0kb downstream 2585   true Lsat_1_v8_lg_4: 87243372-87245956 Lactuca sativa
Lsat_1_v5_gn_4_58161 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 87243957-87245956 Lactuca sativa
Lsat_1_v5_gn_4_58161 5.0kb upstream 5.0kb upstream 5585   true Lsat_1_v8_lg_4: 87238372-87243956 Lactuca sativa
Lsat_1_v5_gn_4_58161 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 87238372-87243371 Lactuca sativa
Lsat_1_v5_gn_4_58161 5.0kb downstream 5.0kb downstream 5585   true Lsat_1_v8_lg_4: 87243372-87248956 Lactuca sativa
Lsat_1_v5_gn_4_58161 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 87243957-87248956 Lactuca sativa
Lsat_1_v5_gn_4_58161 10.0kb upstream 10.0kb upstream 10585   true Lsat_1_v8_lg_4: 87233372-87243956 Lactuca sativa
Lsat_1_v5_gn_4_58161 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 87233372-87243371 Lactuca sativa
Lsat_1_v5_gn_4_58161 10.0kb downstream 10.0kb downstream 10585   true Lsat_1_v8_lg_4: 87243372-87253956 Lactuca sativa
Lsat_1_v5_gn_4_58161 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 87243957-87253956 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481009 5263 Asterids View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain