Gene : Lsat_1_v5_gn_4_42140 L. sativa V8
Defline:  (1 of 1) PTHR22600//PTHR22600:SF14 - BETA-HEXOSAMINIDASE // SUBFAMILY NOT NAMED Genomic Order:  1222
Name:  ? Lsat_1_v5_gn_4_42140 Secondary Identifier:  ? PAC:38930097
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6902 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_42140 0.5kb upstream 0.5kb upstream 12747   true Lsat_1_v8_lg_4: 60629118-60641864 Lactuca sativa
Lsat_1_v5_gn_4_42140 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 60641365-60641864 Lactuca sativa
Lsat_1_v5_gn_4_42140 0.5kb downstream 0.5kb downstream 12747   true Lsat_1_v8_lg_4: 60628618-60641364 Lactuca sativa
Lsat_1_v5_gn_4_42140 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 60628618-60629117 Lactuca sativa
Lsat_1_v5_gn_4_42140 1.0kb upstream 1.0kb upstream 13247   true Lsat_1_v8_lg_4: 60629118-60642364 Lactuca sativa
Lsat_1_v5_gn_4_42140 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 60641365-60642364 Lactuca sativa
Lsat_1_v5_gn_4_42140 1.0kb downstream 1.0kb downstream 13247   true Lsat_1_v8_lg_4: 60628118-60641364 Lactuca sativa
Lsat_1_v5_gn_4_42140 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 60628118-60629117 Lactuca sativa
Lsat_1_v5_gn_4_42140 2.0kb upstream 2.0kb upstream 14247   true Lsat_1_v8_lg_4: 60629118-60643364 Lactuca sativa
Lsat_1_v5_gn_4_42140 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 60641365-60643364 Lactuca sativa
Lsat_1_v5_gn_4_42140 2.0kb downstream 2.0kb downstream 14247   true Lsat_1_v8_lg_4: 60627118-60641364 Lactuca sativa
Lsat_1_v5_gn_4_42140 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 60627118-60629117 Lactuca sativa
Lsat_1_v5_gn_4_42140 5.0kb upstream 5.0kb upstream 17247   true Lsat_1_v8_lg_4: 60629118-60646364 Lactuca sativa
Lsat_1_v5_gn_4_42140 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 60641365-60646364 Lactuca sativa
Lsat_1_v5_gn_4_42140 5.0kb downstream 5.0kb downstream 17247   true Lsat_1_v8_lg_4: 60624118-60641364 Lactuca sativa
Lsat_1_v5_gn_4_42140 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 60624118-60629117 Lactuca sativa
Lsat_1_v5_gn_4_42140 10.0kb upstream 10.0kb upstream 22247   true Lsat_1_v8_lg_4: 60629118-60651364 Lactuca sativa
Lsat_1_v5_gn_4_42140 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 60641365-60651364 Lactuca sativa
Lsat_1_v5_gn_4_42140 10.0kb downstream 10.0kb downstream 22247   true Lsat_1_v8_lg_4: 60619118-60641364 Lactuca sativa
Lsat_1_v5_gn_4_42140 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 60619118-60629117 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474690 5263 Asterids View MSA
123738859 5271 Pentapetalae View MSA
122789804 5272 Eudicot View MSA
122047899 5273 Angiosperm View MSA
121347698 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain