Gene : Lsat_1_v5_gn_4_84321 L. sativa V8
Defline:  (1 of 1) PTHR11062:SF81 - BETA-1,4-XYLOSYLTRANSFERASE IRX10L-RELATED Genomic Order:  2453
Name:  ? Lsat_1_v5_gn_4_84321 Secondary Identifier:  ? PAC:38933493
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5980 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_84321 0.5kb upstream 0.5kb upstream 3095   true Lsat_1_v8_lg_4: 136421732-136424826 Lactuca sativa
Lsat_1_v5_gn_4_84321 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 136421732-136422231 Lactuca sativa
Lsat_1_v5_gn_4_84321 0.5kb downstream 0.5kb downstream 3095   true Lsat_1_v8_lg_4: 136422232-136425326 Lactuca sativa
Lsat_1_v5_gn_4_84321 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 136424827-136425326 Lactuca sativa
Lsat_1_v5_gn_4_84321 1.0kb upstream 1.0kb upstream 3595   true Lsat_1_v8_lg_4: 136421232-136424826 Lactuca sativa
Lsat_1_v5_gn_4_84321 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 136421232-136422231 Lactuca sativa
Lsat_1_v5_gn_4_84321 1.0kb downstream 1.0kb downstream 3595   true Lsat_1_v8_lg_4: 136422232-136425826 Lactuca sativa
Lsat_1_v5_gn_4_84321 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 136424827-136425826 Lactuca sativa
Lsat_1_v5_gn_4_84321 2.0kb upstream 2.0kb upstream 4595   true Lsat_1_v8_lg_4: 136420232-136424826 Lactuca sativa
Lsat_1_v5_gn_4_84321 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 136420232-136422231 Lactuca sativa
Lsat_1_v5_gn_4_84321 2.0kb downstream 2.0kb downstream 4595   true Lsat_1_v8_lg_4: 136422232-136426826 Lactuca sativa
Lsat_1_v5_gn_4_84321 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 136424827-136426826 Lactuca sativa
Lsat_1_v5_gn_4_84321 5.0kb upstream 5.0kb upstream 7595   true Lsat_1_v8_lg_4: 136417232-136424826 Lactuca sativa
Lsat_1_v5_gn_4_84321 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 136417232-136422231 Lactuca sativa
Lsat_1_v5_gn_4_84321 5.0kb downstream 5.0kb downstream 7595   true Lsat_1_v8_lg_4: 136422232-136429826 Lactuca sativa
Lsat_1_v5_gn_4_84321 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 136424827-136429826 Lactuca sativa
Lsat_1_v5_gn_4_84321 10.0kb upstream 10.0kb upstream 12595   true Lsat_1_v8_lg_4: 136412232-136424826 Lactuca sativa
Lsat_1_v5_gn_4_84321 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 136412232-136422231 Lactuca sativa
Lsat_1_v5_gn_4_84321 10.0kb downstream 10.0kb downstream 12595   true Lsat_1_v8_lg_4: 136422232-136434826 Lactuca sativa
Lsat_1_v5_gn_4_84321 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 136424827-136434826 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470032 5263 Asterids View MSA
123741163 5271 Pentapetalae View MSA
122792713 5272 Eudicot View MSA
122045479 5273 Angiosperm View MSA
121345748 5274 Embryophyte View MSA
123428712 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain