Gene : Lsat_1_v5_gn_5_112800 L. sativa V8
Defline:  (1 of 1) KOG1001//KOG1002 - Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily // Nucleotide excision repair protein RAD16 Genomic Order:  3061
Name:  ? Lsat_1_v5_gn_5_112800 Secondary Identifier:  ? PAC:38965983
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_112800 0.5kb upstream 0.5kb upstream 5393   true Lsat_1_v8_lg_5: 237943248-237948640 Lactuca sativa
Lsat_1_v5_gn_5_112800 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 237943248-237943747 Lactuca sativa
Lsat_1_v5_gn_5_112800 0.5kb downstream 0.5kb downstream 5393   true Lsat_1_v8_lg_5: 237943748-237949140 Lactuca sativa
Lsat_1_v5_gn_5_112800 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 237948641-237949140 Lactuca sativa
Lsat_1_v5_gn_5_112800 1.0kb upstream 1.0kb upstream 5893   true Lsat_1_v8_lg_5: 237942748-237948640 Lactuca sativa
Lsat_1_v5_gn_5_112800 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 237942748-237943747 Lactuca sativa
Lsat_1_v5_gn_5_112800 1.0kb downstream 1.0kb downstream 5893   true Lsat_1_v8_lg_5: 237943748-237949640 Lactuca sativa
Lsat_1_v5_gn_5_112800 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 237948641-237949640 Lactuca sativa
Lsat_1_v5_gn_5_112800 2.0kb upstream 2.0kb upstream 6893   true Lsat_1_v8_lg_5: 237941748-237948640 Lactuca sativa
Lsat_1_v5_gn_5_112800 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 237941748-237943747 Lactuca sativa
Lsat_1_v5_gn_5_112800 2.0kb downstream 2.0kb downstream 6893   true Lsat_1_v8_lg_5: 237943748-237950640 Lactuca sativa
Lsat_1_v5_gn_5_112800 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 237948641-237950640 Lactuca sativa
Lsat_1_v5_gn_5_112800 5.0kb upstream 5.0kb upstream 9893   true Lsat_1_v8_lg_5: 237938748-237948640 Lactuca sativa
Lsat_1_v5_gn_5_112800 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 237938748-237943747 Lactuca sativa
Lsat_1_v5_gn_5_112800 5.0kb downstream 5.0kb downstream 9893   true Lsat_1_v8_lg_5: 237943748-237953640 Lactuca sativa
Lsat_1_v5_gn_5_112800 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 237948641-237953640 Lactuca sativa
Lsat_1_v5_gn_5_112800 10.0kb upstream 10.0kb upstream 14893   true Lsat_1_v8_lg_5: 237933748-237948640 Lactuca sativa
Lsat_1_v5_gn_5_112800 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 237933748-237943747 Lactuca sativa
Lsat_1_v5_gn_5_112800 10.0kb downstream 10.0kb downstream 14893   true Lsat_1_v8_lg_5: 237943748-237958640 Lactuca sativa
Lsat_1_v5_gn_5_112800 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 237948641-237958640 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473016 5263 Asterids View MSA
123739841 5271 Pentapetalae View MSA
122786918 5272 Eudicot View MSA
122047052 5273 Angiosperm View MSA
121348350 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain