Gene : Lsat_1_v5_gn_5_112261 L. sativa V8
Defline:  (1 of 2) PTHR22849//PTHR22849:SF52 - WDSAM1 PROTEIN // E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  3046
Name:  ? Lsat_1_v5_gn_5_112261 Secondary Identifier:  ? PAC:38966283
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_112261 0.5kb upstream 0.5kb upstream 2180   true Lsat_1_v8_lg_5: 237597071-237599250 Lactuca sativa
Lsat_1_v5_gn_5_112261 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 237598751-237599250 Lactuca sativa
Lsat_1_v5_gn_5_112261 0.5kb downstream 0.5kb downstream 2180   true Lsat_1_v8_lg_5: 237596571-237598750 Lactuca sativa
Lsat_1_v5_gn_5_112261 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 237596571-237597070 Lactuca sativa
Lsat_1_v5_gn_5_112261 1.0kb upstream 1.0kb upstream 2680   true Lsat_1_v8_lg_5: 237597071-237599750 Lactuca sativa
Lsat_1_v5_gn_5_112261 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 237598751-237599750 Lactuca sativa
Lsat_1_v5_gn_5_112261 1.0kb downstream 1.0kb downstream 2680   true Lsat_1_v8_lg_5: 237596071-237598750 Lactuca sativa
Lsat_1_v5_gn_5_112261 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 237596071-237597070 Lactuca sativa
Lsat_1_v5_gn_5_112261 2.0kb upstream 2.0kb upstream 3680   true Lsat_1_v8_lg_5: 237597071-237600750 Lactuca sativa
Lsat_1_v5_gn_5_112261 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 237598751-237600750 Lactuca sativa
Lsat_1_v5_gn_5_112261 2.0kb downstream 2.0kb downstream 3680   true Lsat_1_v8_lg_5: 237595071-237598750 Lactuca sativa
Lsat_1_v5_gn_5_112261 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 237595071-237597070 Lactuca sativa
Lsat_1_v5_gn_5_112261 5.0kb upstream 5.0kb upstream 6680   true Lsat_1_v8_lg_5: 237597071-237603750 Lactuca sativa
Lsat_1_v5_gn_5_112261 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 237598751-237603750 Lactuca sativa
Lsat_1_v5_gn_5_112261 5.0kb downstream 5.0kb downstream 6680   true Lsat_1_v8_lg_5: 237592071-237598750 Lactuca sativa
Lsat_1_v5_gn_5_112261 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 237592071-237597070 Lactuca sativa
Lsat_1_v5_gn_5_112261 10.0kb upstream 10.0kb upstream 11680   true Lsat_1_v8_lg_5: 237597071-237608750 Lactuca sativa
Lsat_1_v5_gn_5_112261 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 237598751-237608750 Lactuca sativa
Lsat_1_v5_gn_5_112261 10.0kb downstream 10.0kb downstream 11680   true Lsat_1_v8_lg_5: 237587071-237598750 Lactuca sativa
Lsat_1_v5_gn_5_112261 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 237587071-237597070 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480674 5263 Asterids View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain