Gene : Lsat_1_v5_gn_5_132201 L. sativa V8
Defline:  (1 of 62) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  3465
Name:  ? Lsat_1_v5_gn_5_132201 Secondary Identifier:  ? PAC:38967297
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-1081 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_132201 0.5kb upstream 0.5kb upstream 2842   true Lsat_1_v8_lg_5: 256996081-256998922 Lactuca sativa
Lsat_1_v5_gn_5_132201 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 256998423-256998922 Lactuca sativa
Lsat_1_v5_gn_5_132201 0.5kb downstream 0.5kb downstream 2842   true Lsat_1_v8_lg_5: 256995581-256998422 Lactuca sativa
Lsat_1_v5_gn_5_132201 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 256995581-256996080 Lactuca sativa
Lsat_1_v5_gn_5_132201 1.0kb upstream 1.0kb upstream 3342   true Lsat_1_v8_lg_5: 256996081-256999422 Lactuca sativa
Lsat_1_v5_gn_5_132201 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 256998423-256999422 Lactuca sativa
Lsat_1_v5_gn_5_132201 1.0kb downstream 1.0kb downstream 3342   true Lsat_1_v8_lg_5: 256995081-256998422 Lactuca sativa
Lsat_1_v5_gn_5_132201 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 256995081-256996080 Lactuca sativa
Lsat_1_v5_gn_5_132201 2.0kb upstream 2.0kb upstream 4342   true Lsat_1_v8_lg_5: 256996081-257000422 Lactuca sativa
Lsat_1_v5_gn_5_132201 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 256998423-257000422 Lactuca sativa
Lsat_1_v5_gn_5_132201 2.0kb downstream 2.0kb downstream 4342   true Lsat_1_v8_lg_5: 256994081-256998422 Lactuca sativa
Lsat_1_v5_gn_5_132201 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 256994081-256996080 Lactuca sativa
Lsat_1_v5_gn_5_132201 5.0kb upstream 5.0kb upstream 7342   true Lsat_1_v8_lg_5: 256996081-257003422 Lactuca sativa
Lsat_1_v5_gn_5_132201 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 256998423-257003422 Lactuca sativa
Lsat_1_v5_gn_5_132201 5.0kb downstream 5.0kb downstream 7342   true Lsat_1_v8_lg_5: 256991081-256998422 Lactuca sativa
Lsat_1_v5_gn_5_132201 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 256991081-256996080 Lactuca sativa
Lsat_1_v5_gn_5_132201 10.0kb upstream 10.0kb upstream 12342   true Lsat_1_v8_lg_5: 256996081-257008422 Lactuca sativa
Lsat_1_v5_gn_5_132201 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 256998423-257008422 Lactuca sativa
Lsat_1_v5_gn_5_132201 10.0kb downstream 10.0kb downstream 12342   true Lsat_1_v8_lg_5: 256986081-256998422 Lactuca sativa
Lsat_1_v5_gn_5_132201 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 256986081-256996080 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472199 5263 Asterids View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain