Gene : Lsat_1_v5_gn_5_45360 L. sativa V8
Defline:  (1 of 1) 2.1.1.202//2.1.1.203 - Multisite-specific tRNA:(cytosine-C(5))-methyltransferase // tRNA (cytosine(34)-C(5))-methyltransferase Genomic Order:  1230
Name:  ? Lsat_1_v5_gn_5_45360 Secondary Identifier:  ? PAC:38968845
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6829 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_45360 0.5kb upstream 0.5kb upstream 9393   true Lsat_1_v8_lg_5: 103730944-103740336 Lactuca sativa
Lsat_1_v5_gn_5_45360 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 103739837-103740336 Lactuca sativa
Lsat_1_v5_gn_5_45360 0.5kb downstream 0.5kb downstream 9393   true Lsat_1_v8_lg_5: 103730444-103739836 Lactuca sativa
Lsat_1_v5_gn_5_45360 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 103730444-103730943 Lactuca sativa
Lsat_1_v5_gn_5_45360 1.0kb upstream 1.0kb upstream 9893   true Lsat_1_v8_lg_5: 103730944-103740836 Lactuca sativa
Lsat_1_v5_gn_5_45360 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 103739837-103740836 Lactuca sativa
Lsat_1_v5_gn_5_45360 1.0kb downstream 1.0kb downstream 9893   true Lsat_1_v8_lg_5: 103729944-103739836 Lactuca sativa
Lsat_1_v5_gn_5_45360 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 103729944-103730943 Lactuca sativa
Lsat_1_v5_gn_5_45360 2.0kb upstream 2.0kb upstream 10893   true Lsat_1_v8_lg_5: 103730944-103741836 Lactuca sativa
Lsat_1_v5_gn_5_45360 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 103739837-103741836 Lactuca sativa
Lsat_1_v5_gn_5_45360 2.0kb downstream 2.0kb downstream 10893   true Lsat_1_v8_lg_5: 103728944-103739836 Lactuca sativa
Lsat_1_v5_gn_5_45360 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 103728944-103730943 Lactuca sativa
Lsat_1_v5_gn_5_45360 5.0kb upstream 5.0kb upstream 13893   true Lsat_1_v8_lg_5: 103730944-103744836 Lactuca sativa
Lsat_1_v5_gn_5_45360 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 103739837-103744836 Lactuca sativa
Lsat_1_v5_gn_5_45360 5.0kb downstream 5.0kb downstream 13893   true Lsat_1_v8_lg_5: 103725944-103739836 Lactuca sativa
Lsat_1_v5_gn_5_45360 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 103725944-103730943 Lactuca sativa
Lsat_1_v5_gn_5_45360 10.0kb upstream 10.0kb upstream 18893   true Lsat_1_v8_lg_5: 103730944-103749836 Lactuca sativa
Lsat_1_v5_gn_5_45360 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 103739837-103749836 Lactuca sativa
Lsat_1_v5_gn_5_45360 10.0kb downstream 10.0kb downstream 18893   true Lsat_1_v8_lg_5: 103720944-103739836 Lactuca sativa
Lsat_1_v5_gn_5_45360 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 103720944-103730943 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477666 5263 Asterids View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain