Gene : Lsat_1_v5_gn_5_51160 L. sativa V8
Defline:  (1 of 1) PTHR21089//PTHR21089:SF12 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1340
Name:  ? Lsat_1_v5_gn_5_51160 Secondary Identifier:  ? PAC:38965995
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ARO-PWY Lactuca sativa pathologic  
Lsativa PWY-6163 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_51160 0.5kb upstream 0.5kb upstream 5792   true Lsat_1_v8_lg_5: 115407351-115413142 Lactuca sativa
Lsat_1_v5_gn_5_51160 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 115407351-115407850 Lactuca sativa
Lsat_1_v5_gn_5_51160 0.5kb downstream 0.5kb downstream 5792   true Lsat_1_v8_lg_5: 115407851-115413642 Lactuca sativa
Lsat_1_v5_gn_5_51160 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 115413143-115413642 Lactuca sativa
Lsat_1_v5_gn_5_51160 1.0kb upstream 1.0kb upstream 6292   true Lsat_1_v8_lg_5: 115406851-115413142 Lactuca sativa
Lsat_1_v5_gn_5_51160 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 115406851-115407850 Lactuca sativa
Lsat_1_v5_gn_5_51160 1.0kb downstream 1.0kb downstream 6292   true Lsat_1_v8_lg_5: 115407851-115414142 Lactuca sativa
Lsat_1_v5_gn_5_51160 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 115413143-115414142 Lactuca sativa
Lsat_1_v5_gn_5_51160 2.0kb upstream 2.0kb upstream 7292   true Lsat_1_v8_lg_5: 115405851-115413142 Lactuca sativa
Lsat_1_v5_gn_5_51160 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 115405851-115407850 Lactuca sativa
Lsat_1_v5_gn_5_51160 2.0kb downstream 2.0kb downstream 7292   true Lsat_1_v8_lg_5: 115407851-115415142 Lactuca sativa
Lsat_1_v5_gn_5_51160 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 115413143-115415142 Lactuca sativa
Lsat_1_v5_gn_5_51160 5.0kb upstream 5.0kb upstream 10292   true Lsat_1_v8_lg_5: 115402851-115413142 Lactuca sativa
Lsat_1_v5_gn_5_51160 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 115402851-115407850 Lactuca sativa
Lsat_1_v5_gn_5_51160 5.0kb downstream 5.0kb downstream 10292   true Lsat_1_v8_lg_5: 115407851-115418142 Lactuca sativa
Lsat_1_v5_gn_5_51160 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 115413143-115418142 Lactuca sativa
Lsat_1_v5_gn_5_51160 10.0kb upstream 10.0kb upstream 15292   true Lsat_1_v8_lg_5: 115397851-115413142 Lactuca sativa
Lsat_1_v5_gn_5_51160 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 115397851-115407850 Lactuca sativa
Lsat_1_v5_gn_5_51160 10.0kb downstream 10.0kb downstream 15292   true Lsat_1_v8_lg_5: 115407851-115423142 Lactuca sativa
Lsat_1_v5_gn_5_51160 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 115413143-115423142 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468327 5263 Asterids View MSA
123743031 5271 Pentapetalae View MSA
122788487 5272 Eudicot View MSA
122045026 5273 Angiosperm View MSA
121345779 5274 Embryophyte View MSA
123427556 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain