Gene : Lsat_1_v5_gn_6_27040 L. sativa V8
Defline:  (1 of 1) PF00730//PF15628//PF15629 - HhH-GPD superfamily base excision DNA repair protein (HhH-GPD) // RRM in Demeter (RRM_DME) // Permuted single zf-CXXC unit (Perm-CXXC) Genomic Order:  874
Name:  ? Lsat_1_v5_gn_6_27040 Secondary Identifier:  ? PAC:38938515
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_27040 0.5kb upstream 0.5kb upstream 7590   true Lsat_1_v8_lg_6: 37564962-37572551 Lactuca sativa
Lsat_1_v5_gn_6_27040 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 37564962-37565461 Lactuca sativa
Lsat_1_v5_gn_6_27040 0.5kb downstream 0.5kb downstream 7590   true Lsat_1_v8_lg_6: 37565462-37573051 Lactuca sativa
Lsat_1_v5_gn_6_27040 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 37572552-37573051 Lactuca sativa
Lsat_1_v5_gn_6_27040 1.0kb upstream 1.0kb upstream 8090   true Lsat_1_v8_lg_6: 37564462-37572551 Lactuca sativa
Lsat_1_v5_gn_6_27040 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 37564462-37565461 Lactuca sativa
Lsat_1_v5_gn_6_27040 1.0kb downstream 1.0kb downstream 8090   true Lsat_1_v8_lg_6: 37565462-37573551 Lactuca sativa
Lsat_1_v5_gn_6_27040 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 37572552-37573551 Lactuca sativa
Lsat_1_v5_gn_6_27040 2.0kb upstream 2.0kb upstream 9090   true Lsat_1_v8_lg_6: 37563462-37572551 Lactuca sativa
Lsat_1_v5_gn_6_27040 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 37563462-37565461 Lactuca sativa
Lsat_1_v5_gn_6_27040 2.0kb downstream 2.0kb downstream 9090   true Lsat_1_v8_lg_6: 37565462-37574551 Lactuca sativa
Lsat_1_v5_gn_6_27040 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 37572552-37574551 Lactuca sativa
Lsat_1_v5_gn_6_27040 5.0kb upstream 5.0kb upstream 12090   true Lsat_1_v8_lg_6: 37560462-37572551 Lactuca sativa
Lsat_1_v5_gn_6_27040 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 37560462-37565461 Lactuca sativa
Lsat_1_v5_gn_6_27040 5.0kb downstream 5.0kb downstream 12090   true Lsat_1_v8_lg_6: 37565462-37577551 Lactuca sativa
Lsat_1_v5_gn_6_27040 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 37572552-37577551 Lactuca sativa
Lsat_1_v5_gn_6_27040 10.0kb upstream 10.0kb upstream 17090   true Lsat_1_v8_lg_6: 37555462-37572551 Lactuca sativa
Lsat_1_v5_gn_6_27040 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 37555462-37565461 Lactuca sativa
Lsat_1_v5_gn_6_27040 10.0kb downstream 10.0kb downstream 17090   true Lsat_1_v8_lg_6: 37565462-37582551 Lactuca sativa
Lsat_1_v5_gn_6_27040 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 37572552-37582551 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480512 5263 Asterids View MSA
123746757 5271 Pentapetalae View MSA
122794204 5272 Eudicot View MSA
122044419 5273 Angiosperm View MSA
121348532 5274 Embryophyte View MSA
123428690 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain