Gene : Lsat_1_v5_gn_6_46580 L. sativa V8
Defline:  (1 of 2) K06688 - ubiquitin-conjugating enzyme E2 C (UBE2C, UBC11) Genomic Order:  1414
Name:  ? Lsat_1_v5_gn_6_46580 Secondary Identifier:  ? PAC:38937239
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_46580 0.5kb upstream 0.5kb upstream 2615   true Lsat_1_v8_lg_6: 63493057-63495671 Lactuca sativa
Lsat_1_v5_gn_6_46580 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 63495172-63495671 Lactuca sativa
Lsat_1_v5_gn_6_46580 0.5kb downstream 0.5kb downstream 2615   true Lsat_1_v8_lg_6: 63492557-63495171 Lactuca sativa
Lsat_1_v5_gn_6_46580 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 63492557-63493056 Lactuca sativa
Lsat_1_v5_gn_6_46580 1.0kb upstream 1.0kb upstream 3115   true Lsat_1_v8_lg_6: 63493057-63496171 Lactuca sativa
Lsat_1_v5_gn_6_46580 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 63495172-63496171 Lactuca sativa
Lsat_1_v5_gn_6_46580 1.0kb downstream 1.0kb downstream 3115   true Lsat_1_v8_lg_6: 63492057-63495171 Lactuca sativa
Lsat_1_v5_gn_6_46580 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 63492057-63493056 Lactuca sativa
Lsat_1_v5_gn_6_46580 2.0kb upstream 2.0kb upstream 4115   true Lsat_1_v8_lg_6: 63493057-63497171 Lactuca sativa
Lsat_1_v5_gn_6_46580 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 63495172-63497171 Lactuca sativa
Lsat_1_v5_gn_6_46580 2.0kb downstream 2.0kb downstream 4115   true Lsat_1_v8_lg_6: 63491057-63495171 Lactuca sativa
Lsat_1_v5_gn_6_46580 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 63491057-63493056 Lactuca sativa
Lsat_1_v5_gn_6_46580 5.0kb upstream 5.0kb upstream 7115   true Lsat_1_v8_lg_6: 63493057-63500171 Lactuca sativa
Lsat_1_v5_gn_6_46580 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 63495172-63500171 Lactuca sativa
Lsat_1_v5_gn_6_46580 5.0kb downstream 5.0kb downstream 7115   true Lsat_1_v8_lg_6: 63488057-63495171 Lactuca sativa
Lsat_1_v5_gn_6_46580 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 63488057-63493056 Lactuca sativa
Lsat_1_v5_gn_6_46580 10.0kb upstream 10.0kb upstream 12115   true Lsat_1_v8_lg_6: 63493057-63505171 Lactuca sativa
Lsat_1_v5_gn_6_46580 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 63495172-63505171 Lactuca sativa
Lsat_1_v5_gn_6_46580 10.0kb downstream 10.0kb downstream 12115   true Lsat_1_v8_lg_6: 63483057-63495171 Lactuca sativa
Lsat_1_v5_gn_6_46580 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 63483057-63493056 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467628 5263 Asterids View MSA
123742305 5271 Pentapetalae View MSA
122795620 5272 Eudicot View MSA
122049556 5273 Angiosperm View MSA
121349130 5274 Embryophyte View MSA
123424862 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain