Gene : Lsat_1_v5_gn_6_52200 L. sativa V8
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  1570
Name:  ? Lsat_1_v5_gn_6_52200 Secondary Identifier:  ? PAC:38938321
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa CAROTENOID-PWY Lactuca sativa pathologic  
Lsativa PWY-6475 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_52200 0.5kb upstream 0.5kb upstream 2481   true Lsat_1_v8_lg_6: 73509380-73511860 Lactuca sativa
Lsat_1_v5_gn_6_52200 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 73511361-73511860 Lactuca sativa
Lsat_1_v5_gn_6_52200 0.5kb downstream 0.5kb downstream 2481   true Lsat_1_v8_lg_6: 73508880-73511360 Lactuca sativa
Lsat_1_v5_gn_6_52200 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 73508880-73509379 Lactuca sativa
Lsat_1_v5_gn_6_52200 1.0kb upstream 1.0kb upstream 2981   true Lsat_1_v8_lg_6: 73509380-73512360 Lactuca sativa
Lsat_1_v5_gn_6_52200 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 73511361-73512360 Lactuca sativa
Lsat_1_v5_gn_6_52200 1.0kb downstream 1.0kb downstream 2981   true Lsat_1_v8_lg_6: 73508380-73511360 Lactuca sativa
Lsat_1_v5_gn_6_52200 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 73508380-73509379 Lactuca sativa
Lsat_1_v5_gn_6_52200 2.0kb upstream 2.0kb upstream 3981   true Lsat_1_v8_lg_6: 73509380-73513360 Lactuca sativa
Lsat_1_v5_gn_6_52200 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 73511361-73513360 Lactuca sativa
Lsat_1_v5_gn_6_52200 2.0kb downstream 2.0kb downstream 3981   true Lsat_1_v8_lg_6: 73507380-73511360 Lactuca sativa
Lsat_1_v5_gn_6_52200 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 73507380-73509379 Lactuca sativa
Lsat_1_v5_gn_6_52200 5.0kb upstream 5.0kb upstream 6981   true Lsat_1_v8_lg_6: 73509380-73516360 Lactuca sativa
Lsat_1_v5_gn_6_52200 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 73511361-73516360 Lactuca sativa
Lsat_1_v5_gn_6_52200 5.0kb downstream 5.0kb downstream 6981   true Lsat_1_v8_lg_6: 73504380-73511360 Lactuca sativa
Lsat_1_v5_gn_6_52200 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 73504380-73509379 Lactuca sativa
Lsat_1_v5_gn_6_52200 10.0kb upstream 10.0kb upstream 11981   true Lsat_1_v8_lg_6: 73509380-73521360 Lactuca sativa
Lsat_1_v5_gn_6_52200 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 73511361-73521360 Lactuca sativa
Lsat_1_v5_gn_6_52200 10.0kb downstream 10.0kb downstream 11981   true Lsat_1_v8_lg_6: 73499380-73511360 Lactuca sativa
Lsat_1_v5_gn_6_52200 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 73499380-73509379 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
121467558 5263 Asterids View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain