Gene : Lsat_1_v5_gn_6_4121 L. sativa V8
Defline:  (1 of 1) KOG0106//KOG0131//KOG0144 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) Genomic Order:  37
Name:  ? Lsat_1_v5_gn_6_4121 Secondary Identifier:  ? PAC:38941249
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_6_4121 0.5kb upstream 0.5kb upstream 1967   true Lsat_1_v8_lg_6: 3158345-3160311 Lactuca sativa
Lsat_1_v5_gn_6_4121 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_6: 3158345-3158844 Lactuca sativa
Lsat_1_v5_gn_6_4121 0.5kb downstream 0.5kb downstream 1967   true Lsat_1_v8_lg_6: 3158845-3160811 Lactuca sativa
Lsat_1_v5_gn_6_4121 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_6: 3160312-3160811 Lactuca sativa
Lsat_1_v5_gn_6_4121 1.0kb upstream 1.0kb upstream 2467   true Lsat_1_v8_lg_6: 3157845-3160311 Lactuca sativa
Lsat_1_v5_gn_6_4121 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_6: 3157845-3158844 Lactuca sativa
Lsat_1_v5_gn_6_4121 1.0kb downstream 1.0kb downstream 2467   true Lsat_1_v8_lg_6: 3158845-3161311 Lactuca sativa
Lsat_1_v5_gn_6_4121 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_6: 3160312-3161311 Lactuca sativa
Lsat_1_v5_gn_6_4121 2.0kb upstream 2.0kb upstream 3467   true Lsat_1_v8_lg_6: 3156845-3160311 Lactuca sativa
Lsat_1_v5_gn_6_4121 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_6: 3156845-3158844 Lactuca sativa
Lsat_1_v5_gn_6_4121 2.0kb downstream 2.0kb downstream 3467   true Lsat_1_v8_lg_6: 3158845-3162311 Lactuca sativa
Lsat_1_v5_gn_6_4121 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_6: 3160312-3162311 Lactuca sativa
Lsat_1_v5_gn_6_4121 5.0kb upstream 5.0kb upstream 6467   true Lsat_1_v8_lg_6: 3153845-3160311 Lactuca sativa
Lsat_1_v5_gn_6_4121 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_6: 3153845-3158844 Lactuca sativa
Lsat_1_v5_gn_6_4121 5.0kb downstream 5.0kb downstream 6467   true Lsat_1_v8_lg_6: 3158845-3165311 Lactuca sativa
Lsat_1_v5_gn_6_4121 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_6: 3160312-3165311 Lactuca sativa
Lsat_1_v5_gn_6_4121 10.0kb upstream 10.0kb upstream 11467   true Lsat_1_v8_lg_6: 3148845-3160311 Lactuca sativa
Lsat_1_v5_gn_6_4121 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_6: 3148845-3158844 Lactuca sativa
Lsat_1_v5_gn_6_4121 10.0kb downstream 10.0kb downstream 11467   true Lsat_1_v8_lg_6: 3158845-3170311 Lactuca sativa
Lsat_1_v5_gn_6_4121 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_6: 3160312-3170311 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466297 5263 Asterids View MSA
123740281 5271 Pentapetalae View MSA
122787743 5272 Eudicot View MSA
122043874 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310205 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain