Gene : Lsat_1_v5_gn_7_82620 L. sativa V8
Defline:  (1 of 1) PF00124//PF05695 - Photosynthetic reaction centre protein (Photo_RC) // Plant protein of unknown function (DUF825) (DUF825) Genomic Order:  2430
Name:  ? Lsat_1_v5_gn_7_82620 Secondary Identifier:  ? PAC:38913405
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_7_82620 0.5kb upstream 0.5kb upstream 1255   true Lsat_1_v8_lg_7: 137805238-137806492 Lactuca sativa
Lsat_1_v5_gn_7_82620 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_7: 137805238-137805737 Lactuca sativa
Lsat_1_v5_gn_7_82620 0.5kb downstream 0.5kb downstream 1255   true Lsat_1_v8_lg_7: 137805738-137806992 Lactuca sativa
Lsat_1_v5_gn_7_82620 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_7: 137806493-137806992 Lactuca sativa
Lsat_1_v5_gn_7_82620 1.0kb upstream 1.0kb upstream 1755   true Lsat_1_v8_lg_7: 137804738-137806492 Lactuca sativa
Lsat_1_v5_gn_7_82620 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_7: 137804738-137805737 Lactuca sativa
Lsat_1_v5_gn_7_82620 1.0kb downstream 1.0kb downstream 1755   true Lsat_1_v8_lg_7: 137805738-137807492 Lactuca sativa
Lsat_1_v5_gn_7_82620 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_7: 137806493-137807492 Lactuca sativa
Lsat_1_v5_gn_7_82620 2.0kb upstream 2.0kb upstream 2755   true Lsat_1_v8_lg_7: 137803738-137806492 Lactuca sativa
Lsat_1_v5_gn_7_82620 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_7: 137803738-137805737 Lactuca sativa
Lsat_1_v5_gn_7_82620 2.0kb downstream 2.0kb downstream 2755   true Lsat_1_v8_lg_7: 137805738-137808492 Lactuca sativa
Lsat_1_v5_gn_7_82620 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_7: 137806493-137808492 Lactuca sativa
Lsat_1_v5_gn_7_82620 5.0kb upstream 5.0kb upstream 5755   true Lsat_1_v8_lg_7: 137800738-137806492 Lactuca sativa
Lsat_1_v5_gn_7_82620 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_7: 137800738-137805737 Lactuca sativa
Lsat_1_v5_gn_7_82620 5.0kb downstream 5.0kb downstream 5755   true Lsat_1_v8_lg_7: 137805738-137811492 Lactuca sativa
Lsat_1_v5_gn_7_82620 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_7: 137806493-137811492 Lactuca sativa
Lsat_1_v5_gn_7_82620 10.0kb upstream 10.0kb upstream 10755   true Lsat_1_v8_lg_7: 137795738-137806492 Lactuca sativa
Lsat_1_v5_gn_7_82620 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_7: 137795738-137805737 Lactuca sativa
Lsat_1_v5_gn_7_82620 10.0kb downstream 10.0kb downstream 10755   true Lsat_1_v8_lg_7: 137805738-137816492 Lactuca sativa
Lsat_1_v5_gn_7_82620 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_7: 137806493-137816492 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121482515 5263 Asterids View MSA
123751275 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain