Gene : Lsat_1_v5_gn_8_121800 L. sativa V8
Defline:  (1 of 1) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  3714
Name:  ? Lsat_1_v5_gn_8_121800 Secondary Identifier:  ? PAC:38953304
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_121800 0.5kb upstream 0.5kb upstream 15004   true Lsat_1_v8_lg_8: 187737191-187752194 Lactuca sativa
Lsat_1_v5_gn_8_121800 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 187751695-187752194 Lactuca sativa
Lsat_1_v5_gn_8_121800 0.5kb downstream 0.5kb downstream 15004   true Lsat_1_v8_lg_8: 187736691-187751694 Lactuca sativa
Lsat_1_v5_gn_8_121800 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 187736691-187737190 Lactuca sativa
Lsat_1_v5_gn_8_121800 1.0kb upstream 1.0kb upstream 15504   true Lsat_1_v8_lg_8: 187737191-187752694 Lactuca sativa
Lsat_1_v5_gn_8_121800 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 187751695-187752694 Lactuca sativa
Lsat_1_v5_gn_8_121800 1.0kb downstream 1.0kb downstream 15504   true Lsat_1_v8_lg_8: 187736191-187751694 Lactuca sativa
Lsat_1_v5_gn_8_121800 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 187736191-187737190 Lactuca sativa
Lsat_1_v5_gn_8_121800 2.0kb upstream 2.0kb upstream 16504   true Lsat_1_v8_lg_8: 187737191-187753694 Lactuca sativa
Lsat_1_v5_gn_8_121800 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 187751695-187753694 Lactuca sativa
Lsat_1_v5_gn_8_121800 2.0kb downstream 2.0kb downstream 16504   true Lsat_1_v8_lg_8: 187735191-187751694 Lactuca sativa
Lsat_1_v5_gn_8_121800 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 187735191-187737190 Lactuca sativa
Lsat_1_v5_gn_8_121800 5.0kb upstream 5.0kb upstream 19504   true Lsat_1_v8_lg_8: 187737191-187756694 Lactuca sativa
Lsat_1_v5_gn_8_121800 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 187751695-187756694 Lactuca sativa
Lsat_1_v5_gn_8_121800 5.0kb downstream 5.0kb downstream 19504   true Lsat_1_v8_lg_8: 187732191-187751694 Lactuca sativa
Lsat_1_v5_gn_8_121800 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 187732191-187737190 Lactuca sativa
Lsat_1_v5_gn_8_121800 10.0kb upstream 10.0kb upstream 24504   true Lsat_1_v8_lg_8: 187737191-187761694 Lactuca sativa
Lsat_1_v5_gn_8_121800 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 187751695-187761694 Lactuca sativa
Lsat_1_v5_gn_8_121800 10.0kb downstream 10.0kb downstream 24504   true Lsat_1_v8_lg_8: 187727191-187751694 Lactuca sativa
Lsat_1_v5_gn_8_121800 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 187727191-187737190 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474940 5263 Asterids View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain