Gene : Lsat_1_v5_gn_8_79521 L. sativa V8
Defline:  (1 of 1) PTHR31375//PTHR31375:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE ADPG1-RELATED Genomic Order:  2502
Name:  ? Lsat_1_v5_gn_8_79521 Secondary Identifier:  ? PAC:38952034
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-1081 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_79521 0.5kb upstream 0.5kb upstream 7655   true Lsat_1_v8_lg_8: 116612971-116620625 Lactuca sativa
Lsat_1_v5_gn_8_79521 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 116612971-116613470 Lactuca sativa
Lsat_1_v5_gn_8_79521 0.5kb downstream 0.5kb downstream 7655   true Lsat_1_v8_lg_8: 116613471-116621125 Lactuca sativa
Lsat_1_v5_gn_8_79521 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 116620626-116621125 Lactuca sativa
Lsat_1_v5_gn_8_79521 1.0kb upstream 1.0kb upstream 8155   true Lsat_1_v8_lg_8: 116612471-116620625 Lactuca sativa
Lsat_1_v5_gn_8_79521 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 116612471-116613470 Lactuca sativa
Lsat_1_v5_gn_8_79521 1.0kb downstream 1.0kb downstream 8155   true Lsat_1_v8_lg_8: 116613471-116621625 Lactuca sativa
Lsat_1_v5_gn_8_79521 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 116620626-116621625 Lactuca sativa
Lsat_1_v5_gn_8_79521 2.0kb upstream 2.0kb upstream 9155   true Lsat_1_v8_lg_8: 116611471-116620625 Lactuca sativa
Lsat_1_v5_gn_8_79521 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 116611471-116613470 Lactuca sativa
Lsat_1_v5_gn_8_79521 2.0kb downstream 2.0kb downstream 9155   true Lsat_1_v8_lg_8: 116613471-116622625 Lactuca sativa
Lsat_1_v5_gn_8_79521 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 116620626-116622625 Lactuca sativa
Lsat_1_v5_gn_8_79521 5.0kb upstream 5.0kb upstream 12155   true Lsat_1_v8_lg_8: 116608471-116620625 Lactuca sativa
Lsat_1_v5_gn_8_79521 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 116608471-116613470 Lactuca sativa
Lsat_1_v5_gn_8_79521 5.0kb downstream 5.0kb downstream 12155   true Lsat_1_v8_lg_8: 116613471-116625625 Lactuca sativa
Lsat_1_v5_gn_8_79521 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 116620626-116625625 Lactuca sativa
Lsat_1_v5_gn_8_79521 10.0kb upstream 10.0kb upstream 17155   true Lsat_1_v8_lg_8: 116603471-116620625 Lactuca sativa
Lsat_1_v5_gn_8_79521 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 116603471-116613470 Lactuca sativa
Lsat_1_v5_gn_8_79521 10.0kb downstream 10.0kb downstream 17155   true Lsat_1_v8_lg_8: 116613471-116630625 Lactuca sativa
Lsat_1_v5_gn_8_79521 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 116620626-116630625 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121477959 5263 Asterids View MSA
123750458 5271 Pentapetalae View MSA
122794874 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain