Gene : Lsat_1_v5_gn_8_55161 L. sativa V8
Defline:  (1 of 3) K13832 - 3-dehydroquinate dehydratase / shikimate dehydrogenase (aroDE, DHQ-SDH) Genomic Order:  1738
Name:  ? Lsat_1_v5_gn_8_55161 Secondary Identifier:  ? PAC:38953137
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ARO-PWY Lactuca sativa pathologic  
Lsativa PWY-6163 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_8_55161 0.5kb upstream 0.5kb upstream 13660   true Lsat_1_v8_lg_8: 76556746-76570405 Lactuca sativa
Lsat_1_v5_gn_8_55161 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_8: 76556746-76557245 Lactuca sativa
Lsat_1_v5_gn_8_55161 0.5kb downstream 0.5kb downstream 13660   true Lsat_1_v8_lg_8: 76557246-76570905 Lactuca sativa
Lsat_1_v5_gn_8_55161 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_8: 76570406-76570905 Lactuca sativa
Lsat_1_v5_gn_8_55161 1.0kb upstream 1.0kb upstream 14160   true Lsat_1_v8_lg_8: 76556246-76570405 Lactuca sativa
Lsat_1_v5_gn_8_55161 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_8: 76556246-76557245 Lactuca sativa
Lsat_1_v5_gn_8_55161 1.0kb downstream 1.0kb downstream 14160   true Lsat_1_v8_lg_8: 76557246-76571405 Lactuca sativa
Lsat_1_v5_gn_8_55161 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_8: 76570406-76571405 Lactuca sativa
Lsat_1_v5_gn_8_55161 2.0kb upstream 2.0kb upstream 15160   true Lsat_1_v8_lg_8: 76555246-76570405 Lactuca sativa
Lsat_1_v5_gn_8_55161 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_8: 76555246-76557245 Lactuca sativa
Lsat_1_v5_gn_8_55161 2.0kb downstream 2.0kb downstream 15160   true Lsat_1_v8_lg_8: 76557246-76572405 Lactuca sativa
Lsat_1_v5_gn_8_55161 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_8: 76570406-76572405 Lactuca sativa
Lsat_1_v5_gn_8_55161 5.0kb upstream 5.0kb upstream 18160   true Lsat_1_v8_lg_8: 76552246-76570405 Lactuca sativa
Lsat_1_v5_gn_8_55161 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_8: 76552246-76557245 Lactuca sativa
Lsat_1_v5_gn_8_55161 5.0kb downstream 5.0kb downstream 18160   true Lsat_1_v8_lg_8: 76557246-76575405 Lactuca sativa
Lsat_1_v5_gn_8_55161 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_8: 76570406-76575405 Lactuca sativa
Lsat_1_v5_gn_8_55161 10.0kb upstream 10.0kb upstream 23160   true Lsat_1_v8_lg_8: 76547246-76570405 Lactuca sativa
Lsat_1_v5_gn_8_55161 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_8: 76547246-76557245 Lactuca sativa
Lsat_1_v5_gn_8_55161 10.0kb downstream 10.0kb downstream 23160   true Lsat_1_v8_lg_8: 76557246-76580405 Lactuca sativa
Lsat_1_v5_gn_8_55161 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_8: 76570406-76580405 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
121478325 5263 Asterids View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain