Gene : Lsat_1_v5_gn_9_56521 L. sativa V8
Defline:  (1 of 1) 1.14.13.129 - Beta-carotene 3-hydroxylase / Beta-carotene 3,3'-monooxygenase Genomic Order:  1943
Name:  ? Lsat_1_v5_gn_9_56521 Secondary Identifier:  ? PAC:38921714
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa CAROTENOID-PWY Lactuca sativa pathologic  
Lsativa PWY-5944 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_56521 0.5kb upstream 0.5kb upstream 3304   true Lsat_1_v8_lg_9: 68237608-68240911 Lactuca sativa
Lsat_1_v5_gn_9_56521 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 68237608-68238107 Lactuca sativa
Lsat_1_v5_gn_9_56521 0.5kb downstream 0.5kb downstream 3304   true Lsat_1_v8_lg_9: 68238108-68241411 Lactuca sativa
Lsat_1_v5_gn_9_56521 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 68240912-68241411 Lactuca sativa
Lsat_1_v5_gn_9_56521 1.0kb upstream 1.0kb upstream 3804   true Lsat_1_v8_lg_9: 68237108-68240911 Lactuca sativa
Lsat_1_v5_gn_9_56521 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 68237108-68238107 Lactuca sativa
Lsat_1_v5_gn_9_56521 1.0kb downstream 1.0kb downstream 3804   true Lsat_1_v8_lg_9: 68238108-68241911 Lactuca sativa
Lsat_1_v5_gn_9_56521 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 68240912-68241911 Lactuca sativa
Lsat_1_v5_gn_9_56521 2.0kb upstream 2.0kb upstream 4804   true Lsat_1_v8_lg_9: 68236108-68240911 Lactuca sativa
Lsat_1_v5_gn_9_56521 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 68236108-68238107 Lactuca sativa
Lsat_1_v5_gn_9_56521 2.0kb downstream 2.0kb downstream 4804   true Lsat_1_v8_lg_9: 68238108-68242911 Lactuca sativa
Lsat_1_v5_gn_9_56521 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 68240912-68242911 Lactuca sativa
Lsat_1_v5_gn_9_56521 5.0kb upstream 5.0kb upstream 7804   true Lsat_1_v8_lg_9: 68233108-68240911 Lactuca sativa
Lsat_1_v5_gn_9_56521 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 68233108-68238107 Lactuca sativa
Lsat_1_v5_gn_9_56521 5.0kb downstream 5.0kb downstream 7804   true Lsat_1_v8_lg_9: 68238108-68245911 Lactuca sativa
Lsat_1_v5_gn_9_56521 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 68240912-68245911 Lactuca sativa
Lsat_1_v5_gn_9_56521 10.0kb upstream 10.0kb upstream 12804   true Lsat_1_v8_lg_9: 68228108-68240911 Lactuca sativa
Lsat_1_v5_gn_9_56521 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 68228108-68238107 Lactuca sativa
Lsat_1_v5_gn_9_56521 10.0kb downstream 10.0kb downstream 12804   true Lsat_1_v8_lg_9: 68238108-68250911 Lactuca sativa
Lsat_1_v5_gn_9_56521 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 68240912-68250911 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479639 5263 Asterids View MSA
123749049 5271 Pentapetalae View MSA
122787521 5272 Eudicot View MSA
122046641 5273 Angiosperm View MSA
123429104 5275 Viridiplantae View MSA
121351007 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain