Gene : Lsat_1_v5_gn_9_51000 L. sativa V8
Defline:  (1 of 3) K02704 - photosystem II CP47 chlorophyll apoprotein (psbB) Genomic Order:  1728
Name:  ? Lsat_1_v5_gn_9_51000 Secondary Identifier:  ? PAC:38924266
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_51000 0.5kb upstream 0.5kb upstream 2027   true Lsat_1_v8_lg_9: 57923713-57925739 Lactuca sativa
Lsat_1_v5_gn_9_51000 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 57923713-57924212 Lactuca sativa
Lsat_1_v5_gn_9_51000 0.5kb downstream 0.5kb downstream 2027   true Lsat_1_v8_lg_9: 57924213-57926239 Lactuca sativa
Lsat_1_v5_gn_9_51000 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 57925740-57926239 Lactuca sativa
Lsat_1_v5_gn_9_51000 1.0kb upstream 1.0kb upstream 2527   true Lsat_1_v8_lg_9: 57923213-57925739 Lactuca sativa
Lsat_1_v5_gn_9_51000 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 57923213-57924212 Lactuca sativa
Lsat_1_v5_gn_9_51000 1.0kb downstream 1.0kb downstream 2527   true Lsat_1_v8_lg_9: 57924213-57926739 Lactuca sativa
Lsat_1_v5_gn_9_51000 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 57925740-57926739 Lactuca sativa
Lsat_1_v5_gn_9_51000 2.0kb upstream 2.0kb upstream 3527   true Lsat_1_v8_lg_9: 57922213-57925739 Lactuca sativa
Lsat_1_v5_gn_9_51000 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 57922213-57924212 Lactuca sativa
Lsat_1_v5_gn_9_51000 2.0kb downstream 2.0kb downstream 3527   true Lsat_1_v8_lg_9: 57924213-57927739 Lactuca sativa
Lsat_1_v5_gn_9_51000 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 57925740-57927739 Lactuca sativa
Lsat_1_v5_gn_9_51000 5.0kb upstream 5.0kb upstream 6527   true Lsat_1_v8_lg_9: 57919213-57925739 Lactuca sativa
Lsat_1_v5_gn_9_51000 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 57919213-57924212 Lactuca sativa
Lsat_1_v5_gn_9_51000 5.0kb downstream 5.0kb downstream 6527   true Lsat_1_v8_lg_9: 57924213-57930739 Lactuca sativa
Lsat_1_v5_gn_9_51000 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 57925740-57930739 Lactuca sativa
Lsat_1_v5_gn_9_51000 10.0kb upstream 10.0kb upstream 11527   true Lsat_1_v8_lg_9: 57914213-57925739 Lactuca sativa
Lsat_1_v5_gn_9_51000 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 57914213-57924212 Lactuca sativa
Lsat_1_v5_gn_9_51000 10.0kb downstream 10.0kb downstream 11527   true Lsat_1_v8_lg_9: 57924213-57935739 Lactuca sativa
Lsat_1_v5_gn_9_51000 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 57925740-57935739 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480419 5263 Asterids View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain