Gene : Lsat_1_v5_gn_9_99580 L. sativa V8
Defline:  (1 of 2) K00791 - tRNA dimethylallyltransferase (miaA, TRIT1) Genomic Order:  3123
Name:  ? Lsat_1_v5_gn_9_99580 Secondary Identifier:  ? PAC:38924491
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-2781 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_9_99580 0.5kb upstream 0.5kb upstream 3268   true Lsat_1_v8_lg_9: 157805958-157809225 Lactuca sativa
Lsat_1_v5_gn_9_99580 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_9: 157808726-157809225 Lactuca sativa
Lsat_1_v5_gn_9_99580 0.5kb downstream 0.5kb downstream 3268   true Lsat_1_v8_lg_9: 157805458-157808725 Lactuca sativa
Lsat_1_v5_gn_9_99580 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_9: 157805458-157805957 Lactuca sativa
Lsat_1_v5_gn_9_99580 1.0kb upstream 1.0kb upstream 3768   true Lsat_1_v8_lg_9: 157805958-157809725 Lactuca sativa
Lsat_1_v5_gn_9_99580 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_9: 157808726-157809725 Lactuca sativa
Lsat_1_v5_gn_9_99580 1.0kb downstream 1.0kb downstream 3768   true Lsat_1_v8_lg_9: 157804958-157808725 Lactuca sativa
Lsat_1_v5_gn_9_99580 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_9: 157804958-157805957 Lactuca sativa
Lsat_1_v5_gn_9_99580 2.0kb upstream 2.0kb upstream 4768   true Lsat_1_v8_lg_9: 157805958-157810725 Lactuca sativa
Lsat_1_v5_gn_9_99580 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_9: 157808726-157810725 Lactuca sativa
Lsat_1_v5_gn_9_99580 2.0kb downstream 2.0kb downstream 4768   true Lsat_1_v8_lg_9: 157803958-157808725 Lactuca sativa
Lsat_1_v5_gn_9_99580 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_9: 157803958-157805957 Lactuca sativa
Lsat_1_v5_gn_9_99580 5.0kb upstream 5.0kb upstream 7768   true Lsat_1_v8_lg_9: 157805958-157813725 Lactuca sativa
Lsat_1_v5_gn_9_99580 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_9: 157808726-157813725 Lactuca sativa
Lsat_1_v5_gn_9_99580 5.0kb downstream 5.0kb downstream 7768   true Lsat_1_v8_lg_9: 157800958-157808725 Lactuca sativa
Lsat_1_v5_gn_9_99580 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_9: 157800958-157805957 Lactuca sativa
Lsat_1_v5_gn_9_99580 10.0kb upstream 10.0kb upstream 12768   true Lsat_1_v8_lg_9: 157805958-157818725 Lactuca sativa
Lsat_1_v5_gn_9_99580 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_9: 157808726-157818725 Lactuca sativa
Lsat_1_v5_gn_9_99580 10.0kb downstream 10.0kb downstream 12768   true Lsat_1_v8_lg_9: 157795958-157808725 Lactuca sativa
Lsat_1_v5_gn_9_99580 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_9: 157795958-157805957 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471327 5263 Asterids View MSA
123738978 5271 Pentapetalae View MSA
122792264 5272 Eudicot View MSA
122047791 5273 Angiosperm View MSA
121350682 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain