Protein Family : PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 124466691

Method ID:  5269 Method Name:  Grass
Sequence Alignment:  View MSA Member Count:  16

16 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
Zm00008a039088 (1 of 8) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) Z. mays PH207 v1.1 2382   chrUNKNOWN: 1355388-1357769
Zm00008a039085 (1 of 8) PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) Z. mays PH207 v1.1 6591   chrUNKNOWN: 1307846-1314436
Zm00001d041855 (1 of 3) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H Z. mays RefGen_V4 9980   3: 141235971-141245950
Pahal.4G142300 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 4239   Chr04: 14245667-14249905
Pahal.4G192800 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 981   Chr04: 31008970-31009950
Pahal.6G149100 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 1096   Chr06: 26038985-26040080
Pahal.9G305100 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 1587   Chr09: 34056707-34058293
Pahal.9G343300 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 2660   Chr09: 47716786-47719445
Pahal.3G352200 (1 of 26) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii v3.1 1221   Chr03: 34020758-34021978
PhHAL.6G117900 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 1536   Chr06: 15650736-15652271
PhHAL.1G183100 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 1369   Chr01: 26070480-26071848
PhHAL.1G274800 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 1369   Chr01: 47000563-47001931
PhHAL.2G173600 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 9671   Chr02: 27112574-27122244
PhHAL.4G139400 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 867   Chr04: 13029686-13030552
PhHAL.5G304200 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 948   Chr05: 23391743-23392690
PhHAL.6G128800 (1 of 16) 2.7.7.49//2.7.7.7//3.1.26.4 - RNA-directed DNA polymerase / Revertase // DNA-directed DNA polymerase / DNA-dependent DNA polymerase // Ribonuclease H / RNase H P. hallii HAL v2.1 675   Chr06: 18714429-18715103

16 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Zm00008a039088_P01 Z. mays PH207 v1.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 2 5269 Grass
Zm00008a039085_P01 Z. mays PH207 v1.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 2 5269 Grass
Zm00001d041855_P006 Z. mays RefGen_V4 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 1 5269 Grass
Pahal.3G352200.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
Pahal.9G343300.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
Pahal.4G142300.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
Pahal.4G192800.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
Pahal.6G149100.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
PhHAL.6G128800.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
PhHAL.2G173600.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
PhHAL.1G274800.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
PhHAL.4G139400.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
PhHAL.5G304200.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
Pahal.9G305100.1.p P. hallii v3.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 6 5269 Grass
PhHAL.1G183100.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass
PhHAL.6G117900.1.p P. hallii HAL v2.1 124466691 PF00078//PF00665 - Reverse transcriptase (RNA-dependent DNA polymerase) (RVT_1) // Integrase core domain (rve) 7 5269 Grass