Protein Family : sigma factor 4 124245712

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  16
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16 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29864.t000020 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC R. communis v0.1 2106   29864: 286359-288464
orange1.1g046578m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. sinensis v1.1 1878   scaffold00003: 4002653-4004530
AT5G13730 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. thaliana TAIR10 SIG4 1728   Chr5: 4429110-4430837
Thhalv10013654m.g (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC E. salsugineum v1.0 1822   scaffold_2: 4495465-4497286
Ciclev10033747m.g (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. clementina v1.0 1926   scaffold_4: 24944130-24946055
Araha.3105s0018 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC A. halleri v1.1 2180   Scaffold3105: 66093-68272
Cagra.0596s0063 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. grandiflora v1.1 1870   Scaffold596: 269059-270928
Brara.B00515 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2600   A02: 2386524-2389123
Brara.J02068 (1 of 2) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. rapa FPsc v1.3 2068   A10: 16017406-16019473
Bostr.2902s0107 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC B. stricta v1.2 2161   Scaffold2902: 529277-531437
SapurV1A.4644s0020 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4179   Scaffold4644: 2396-6574
SapurV1A.0027s0740 (1 of 2) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC S. purpurea v1.0 4177   chr09: 4738266-4742442
Manes.10G136500 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC M. esculenta v6.1 2372   Chromosome10: 24778962-24781333
Potri.009G057200 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. trichocarpa v3.1 4122   Chr09: 5992464-5996585
Podel.09G058100 (1 of 1) PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC P. deltoides WV94 v2.1 3971   Chr09: 5983553-5987523
Carub.0006s1191 (1 of 1) PTHR30603//PTHR30603:SF24 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC C. rubella v1.1 1769   scaffold_6: 4427840-4429608

16 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
orange1.1g046578m C. sinensis v1.1 124245712 sigma factor 4 1 5268 Malvidae
Thhalv10013654m E. salsugineum v1.0 124245712 sigma factor 4 1 5268 Malvidae
Cagra.0596s0063.1.p C. grandiflora v1.1 124245712 sigma factor 4 1 5268 Malvidae
Brara.J02068.1.p B. rapa FPsc v1.3 124245712 sigma factor 4 2 5268 Malvidae
Manes.10G136500.1.p M. esculenta v6.1 124245712 sigma factor 4 1 5268 Malvidae
Potri.009G057200.1.p P. trichocarpa v3.1 124245712 sigma factor 4 1 5268 Malvidae
29864.m001444 R. communis v0.1 124245712 sigma factor 4 1 5268 Malvidae
AT5G13730.1 A. thaliana TAIR10 124245712 sigma factor 4 1 5268 Malvidae
Ciclev10033747m C. clementina v1.0 124245712 sigma factor 4 1 5268 Malvidae
Araha.3105s0018.1.p A. halleri v1.1 124245712 sigma factor 4 1 5268 Malvidae
Brara.B00515.1.p B. rapa FPsc v1.3 124245712 sigma factor 4 2 5268 Malvidae
Bostr.2902s0107.1.p B. stricta v1.2 124245712 sigma factor 4 1 5268 Malvidae
SapurV1A.0027s0740.1.p S. purpurea v1.0 124245712 sigma factor 4 2 5268 Malvidae
SapurV1A.4644s0020.1.p S. purpurea v1.0 124245712 sigma factor 4 2 5268 Malvidae
Podel.09G058100.1.p P. deltoides WV94 v2.1 124245712 sigma factor 4 1 5268 Malvidae
Carub.0006s1191.1.p C. rubella v1.1 124245712 sigma factor 4 1 5268 Malvidae