Protein Family : PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 124249922

Method ID:  5268 Method Name:  Malvidae
Sequence Alignment:  View MSA Member Count:  29

29 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29739.t000136 conserved hypothetical protein R. communis v0.1 523   29739: 868304-868826
orange1.1g034248m.g   C. sinensis v1.1 1910   scaffold00250: 30444-32353
AT4G39235   A. thaliana TAIR10 1164   Chr4: 18268049-18269212
AT3G05570   A. thaliana TAIR10 1238   Chr3: 1616102-1617339
Thhalv10026620m.g   E. salsugineum v1.0 1643   scaffold_1: 401389-403031
Thhalv10021849m.g   E. salsugineum v1.0 1259   scaffold_13: 7778601-7779859
Ciclev10029652m.g   C. clementina v1.0 2006   scaffold_8: 5039714-5041719
Lus10004160.g   L. usitatissimum v1.0 375   scaffold2404: 62769-63143
Lus10021065.g   L. usitatissimum v1.0 377   scaffold155: 360602-360978
Gorai.013G010600   G. raimondii v2.1 3091   Chr13: 705417-708507
Gorai.013G061200   G. raimondii v2.1 1638   Chr13: 6642627-6644264
Thecc1EG001694 Dipeptide transport ATP-binding protein dppF (70%P) T. cacao v1.1 1241   scaffold_1: 8790355-8791595
Araha.4538s0005   A. halleri v1.1 1267   Scaffold4538: 14189-15455
Cagra.0410s0004   C. grandiflora v1.1 1263   Scaffold410: 7851-9113
Cagra.2374s0019   C. grandiflora v1.1 1435   Scaffold2374: 54552-55986
Brara.F03874   B. rapa FPsc v1.3 941   A06: 29084630-29085570
Brara.E03357   B. rapa FPsc v1.3 1132   A05: 26960694-26961825
Bostr.2570s0123   B. stricta v1.2 1122   Scaffold2570: 619907-621028
SapurV1A.0354s0240 hypothetical protein S. purpurea v1.0 2549   chr15: 13299992-13302540
SapurV1A.1359s0010 hypothetical protein S. purpurea v1.0 1168   Scaffold1359: 12001-13168
SapurV1A.0076s0080 hypothetical protein S. purpurea v1.0 531   chr05: 17579804-17580334
Manes.17G101700   M. esculenta v6.1 1561   Chromosome17: 24288116-24289676
AL7G11210   A. lyrata v2.1 1095   scaffold_7: 461940-463034
Potri.002G057100 similar to expressed protein in Arabidopsis thaliana; [ ortholog of At3g05570,At4g39235,] P. trichocarpa v3.1 1321   Chr02: 3815118-3816438
Potri.004G155500   P. trichocarpa v3.1 2360   Chr04: 17695645-17698004
Podel.04G159400   P. deltoides WV94 v2.1 1898   Chr04: 17417115-17419012
Podel.02G062600   P. deltoides WV94 v2.1 2175   Chr02: 4367216-4369390
Carub.0007s0115   C. rubella v1.1 1233   scaffold_7: 413371-414603
Carub.0003s0488   C. rubella v1.1 497   scaffold_3: 1645523-1646019

29 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29739.m003700 R. communis v0.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
AT4G39235.1 A. thaliana TAIR10 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Thhalv10021849m E. salsugineum v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Lus10021065 L. usitatissimum v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Gorai.013G010600.1 G. raimondii v2.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Thecc1EG001694t1 T. cacao v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
Cagra.2374s0019.1.p C. grandiflora v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Cagra.0410s0004.1.p C. grandiflora v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Bostr.2570s0123.1.p B. stricta v1.2 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
SapurV1A.0076s0080.1.p S. purpurea v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 3 5268 Malvidae
Potri.004G155500.1.p P. trichocarpa v3.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Carub.0003s0488.1.p C. rubella v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
orange1.1g034248m C. sinensis v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
AT3G05570.1 A. thaliana TAIR10 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Thhalv10026620m E. salsugineum v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Ciclev10029652m C. clementina v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
Lus10004160 L. usitatissimum v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Gorai.013G061200.1 G. raimondii v2.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Araha.4538s0005.1.p A. halleri v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
Brara.E03357.1.p B. rapa FPsc v1.3 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Brara.F03874.1.p B. rapa FPsc v1.3 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
SapurV1A.1359s0010.1.p S. purpurea v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 3 5268 Malvidae
SapurV1A.0354s0240.1.p S. purpurea v1.0 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 3 5268 Malvidae
Manes.17G101700.1.p M. esculenta v6.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
AL7G11210.t1 A. lyrata v2.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 1 5268 Malvidae
Potri.002G057100.1.p P. trichocarpa v3.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Podel.02G062600.1.p P. deltoides WV94 v2.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Podel.04G159400.1.p P. deltoides WV94 v2.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae
Carub.0007s0115.1.p C. rubella v1.1 124249922 PF13966 - zinc-binding in reverse transcriptase (zf-RVT) 2 5268 Malvidae