Protein Family : PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 122026804

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  29

29 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29852.t000008 (1 of 1) PF04983//PF04998 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) R. communis v0.1 848   29852: 350124-350971
Migut.L00290 (1 of 1) PF04998//PF05000 - RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) M. guttatus v2.0 759   scaffold_12: 3903366-3904124
Medtr8g016520 (1 of 2) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) M. truncatula Mt4.0v1 798   chr8: 5582644-5583441
Traes_2DL_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_2dl_v1_9880744: 246-860
Traes_3AL_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_3al_v1_4325872: 101-715
Traes_3AL_51A4FD8BE (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 1601   ta_iwgsc_3al_v1_4310602: 1-1601
Traes_3AS_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_3as_v1_3363376: 2050-2664
Traes_4AS_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_4as_v2_6014268: 311-925
Traes_4BL_F4056AB1E (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 2153   ta_iwgsc_4bl_v1_7032120: 10474-12626
Traes_4BS_ECFA6F553 (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 2012   ta_iwgsc_4bs_v1_3318923: 1-2012
Traes_4DL_56A2A54D1 (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 1949   ta_iwgsc_4dl_v3_14472569: 243-2191
Traes_5BL_808F1FE11 (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 1416   ta_iwgsc_5bl_v1_4382580: 1-1416
Traes_5BS_810643B91 (1 of 14) PF04998//PF05000 - RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 1549   ta_iwgsc_5bs_v1_2285518: 110-1658
Traes_5DS_F4F2C0249 (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_5ds_v1_2772379: 71-685
Traes_5DS_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_5ds_v1_2773954: 1029-1643
Traes_6AS_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_6as_v1_4369218: 279-893
Traes_6DL_8441D575B (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 615   ta_iwgsc_6dl_v1_226174: 67-681
Traes_6DS_086988A37 (1 of 15) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) T. aestivum v2.2 9918   ta_iwgsc_6ds_v1_2125648: 4-9921
Manes.03G085000 (1 of 2) PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' M. esculenta v6.1 974   Chromosome03: 13872517-13873490
Bradi4g17462 (1 of 5) PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' B. distachyon v3.1 552   Bd4: 18926734-18927285
Zosma6353g00010 (1 of 3) PTHR19376//PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' Z. marina v2.2 699   scaffold_6353: 1-699
Solyc08g028940.1 (1 of 1) PF04998//PF05000 - RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) S. lycopersicum ITAG2.4 1048   SL2.50ch08: 39146919-39147966
Pavir.6KG114200 (1 of 1) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) P. virgatum v4.1 810   Chr06K: 13859738-13860547
Oeu050097.1 (1 of 1) PF04983//PF04998 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) O. europaea v1.0 1203   chr14: 11332902-11334104
HORVU2Hr1G121950 (1 of 8) PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' H. vulgare r1 614   chr2H: 751820031-751820644
Pahal.2G129700 (1 of 1) PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) P. hallii v3.1 3188   Chr02: 11526775-11529962
PhHAL.9G266500 (1 of 4) PTHR19376//PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' P. hallii HAL v2.1 894   Chr09: 20413367-20414260
OsKitaake01g355500 (1 of 2) PTHR19376//PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE // DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' O. sativa Kitaake v3.1 810   Chr1: 34369828-34370637
Brast08G036500 (1 of 2) PTHR19376:SF38 - DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'' B. stacei v1.1 1134   Chr08: 2142380-2143513

29 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Migut.L00290.1.p M. guttatus v2.0 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Pavir.6KG114200.1.p P. virgatum v4.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Oeu050097.1 O. europaea v1.0 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Zosma6353g00010.1 Z. marina v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Solyc08g028940.1.1 S. lycopersicum ITAG2.4 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Traes_6DS_086988A37.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_6AS_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_6DL_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_4BS_ECFA6F553.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_2DL_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_3AS_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_3AL_51A4FD8BE.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_3AL_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_4AS_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_5BL_808F1FE11.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_5DS_8441D575B.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_5BS_810643B91.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_4BL_F4056AB1E.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_5DS_F4F2C0249.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
Traes_4DL_56A2A54D1.1 T. aestivum v2.2 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 15 5273 Angiosperm
HORVU2Hr1G121950.1 H. vulgare r1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Pahal.2G129700.1.p P. hallii v3.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
PhHAL.9G266500.1.p P. hallii HAL v2.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Manes.03G085000.1.p M. esculenta v6.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
OsKitaake01g355500.1.p O. sativa Kitaake v3.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
29852.m001989 R. communis v0.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Bradi4g17462.1.p B. distachyon v3.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Brast08G036500.1.p B. stacei v1.1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm
Medtr8g016520.1 M. truncatula Mt4.0v1 122026804 PF04983//PF04998//PF05000 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) 1 5273 Angiosperm