Gene : Carub.0001s4486 C. rubella v1.1
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  4486
Name:  ? Carub.0001s4486 Secondary Identifier:  ? PAC:39228181
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s4486 0.5kb upstream 0.5kb upstream 2241 true scaffold_1: 19607388-19609628 Capsella rubella
Carub.0001s4486 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 19609129-19609628 Capsella rubella
Carub.0001s4486 0.5kb downstream 0.5kb downstream 2241 true scaffold_1: 19606888-19609128 Capsella rubella
Carub.0001s4486 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 19606888-19607387 Capsella rubella
Carub.0001s4486 1.0kb upstream 1.0kb upstream 2741 true scaffold_1: 19607388-19610128 Capsella rubella
Carub.0001s4486 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 19609129-19610128 Capsella rubella
Carub.0001s4486 1.0kb downstream 1.0kb downstream 2741 true scaffold_1: 19606388-19609128 Capsella rubella
Carub.0001s4486 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 19606388-19607387 Capsella rubella
Carub.0001s4486 2.0kb upstream 2.0kb upstream 3741 true scaffold_1: 19607388-19611128 Capsella rubella
Carub.0001s4486 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 19609129-19611128 Capsella rubella
Carub.0001s4486 2.0kb downstream 2.0kb downstream 3741 true scaffold_1: 19605388-19609128 Capsella rubella
Carub.0001s4486 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 19605388-19607387 Capsella rubella
Carub.0001s4486 5.0kb upstream 5.0kb upstream 6741 true scaffold_1: 19607388-19614128 Capsella rubella
Carub.0001s4486 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 19609129-19614128 Capsella rubella
Carub.0001s4486 5.0kb downstream 5.0kb downstream 6741 true scaffold_1: 19602388-19609128 Capsella rubella
Carub.0001s4486 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 19602388-19607387 Capsella rubella
Carub.0001s4486 10.0kb upstream 10.0kb upstream 11741 true scaffold_1: 19607388-19619128 Capsella rubella
Carub.0001s4486 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 19609129-19619128 Capsella rubella
Carub.0001s4486 10.0kb downstream 10.0kb downstream 11741 true scaffold_1: 19597388-19609128 Capsella rubella
Carub.0001s4486 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 19597388-19607387 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360497 5261 Brassicaceae View MSA
123829455 5264 Brassicales-Malvales View MSA
124344940 5266 SBM View MSA
124239805 5268 Malvidae View MSA
124063460 5270 Rosid View MSA
123739745 5271 Pentapetalae View MSA
122788852 5272 Eudicot View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain