Gene : Carub.0001s0188 C. rubella v1.1
Defline:  (1 of 1) PTHR31375:SF17 - EXOPOLYGALACTURONASE CLONE GBGE184 Genomic Order:  188
Name:  ? Carub.0001s0188 Secondary Identifier:  ? PAC:39229049
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-1081 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0001s0188 0.5kb upstream 0.5kb upstream 2336 true scaffold_1: 643276-645611 Capsella rubella
Carub.0001s0188 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 645112-645611 Capsella rubella
Carub.0001s0188 0.5kb downstream 0.5kb downstream 2336 true scaffold_1: 642776-645111 Capsella rubella
Carub.0001s0188 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 642776-643275 Capsella rubella
Carub.0001s0188 1.0kb upstream 1.0kb upstream 2836 true scaffold_1: 643276-646111 Capsella rubella
Carub.0001s0188 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 645112-646111 Capsella rubella
Carub.0001s0188 1.0kb downstream 1.0kb downstream 2836 true scaffold_1: 642276-645111 Capsella rubella
Carub.0001s0188 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 642276-643275 Capsella rubella
Carub.0001s0188 2.0kb upstream 2.0kb upstream 3836 true scaffold_1: 643276-647111 Capsella rubella
Carub.0001s0188 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 645112-647111 Capsella rubella
Carub.0001s0188 2.0kb downstream 2.0kb downstream 3836 true scaffold_1: 641276-645111 Capsella rubella
Carub.0001s0188 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 641276-643275 Capsella rubella
Carub.0001s0188 5.0kb upstream 5.0kb upstream 6836 true scaffold_1: 643276-650111 Capsella rubella
Carub.0001s0188 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 645112-650111 Capsella rubella
Carub.0001s0188 5.0kb downstream 5.0kb downstream 6836 true scaffold_1: 638276-645111 Capsella rubella
Carub.0001s0188 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 638276-643275 Capsella rubella
Carub.0001s0188 10.0kb upstream 10.0kb upstream 11836 true scaffold_1: 643276-655111 Capsella rubella
Carub.0001s0188 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 645112-655111 Capsella rubella
Carub.0001s0188 10.0kb downstream 10.0kb downstream 11836 true scaffold_1: 633276-645111 Capsella rubella
Carub.0001s0188 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 633276-643275 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369949 5261 Brassicaceae View MSA
123837195 5264 Brassicales-Malvales View MSA
124351159 5266 SBM View MSA
124251239 5268 Malvidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain