Gene : Carub.0007s1730 C. rubella v1.1
Defline:  (1 of 2) PTHR31339:SF3 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  1730
Name:  ? Carub.0007s1730 Secondary Identifier:  ? PAC:39234755
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1730 0.5kb upstream 0.5kb upstream 3802 true scaffold_7: 6448773-6452574 Capsella rubella
Carub.0007s1730 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 6448773-6449272 Capsella rubella
Carub.0007s1730 0.5kb downstream 0.5kb downstream 3802 true scaffold_7: 6449273-6453074 Capsella rubella
Carub.0007s1730 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 6452575-6453074 Capsella rubella
Carub.0007s1730 1.0kb upstream 1.0kb upstream 4302 true scaffold_7: 6448273-6452574 Capsella rubella
Carub.0007s1730 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 6448273-6449272 Capsella rubella
Carub.0007s1730 1.0kb downstream 1.0kb downstream 4302 true scaffold_7: 6449273-6453574 Capsella rubella
Carub.0007s1730 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 6452575-6453574 Capsella rubella
Carub.0007s1730 2.0kb upstream 2.0kb upstream 5302 true scaffold_7: 6447273-6452574 Capsella rubella
Carub.0007s1730 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 6447273-6449272 Capsella rubella
Carub.0007s1730 2.0kb downstream 2.0kb downstream 5302 true scaffold_7: 6449273-6454574 Capsella rubella
Carub.0007s1730 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 6452575-6454574 Capsella rubella
Carub.0007s1730 5.0kb upstream 5.0kb upstream 8302 true scaffold_7: 6444273-6452574 Capsella rubella
Carub.0007s1730 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 6444273-6449272 Capsella rubella
Carub.0007s1730 5.0kb downstream 5.0kb downstream 8302 true scaffold_7: 6449273-6457574 Capsella rubella
Carub.0007s1730 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 6452575-6457574 Capsella rubella
Carub.0007s1730 10.0kb upstream 10.0kb upstream 13302 true scaffold_7: 6439273-6452574 Capsella rubella
Carub.0007s1730 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 6439273-6449272 Capsella rubella
Carub.0007s1730 10.0kb downstream 10.0kb downstream 13302 true scaffold_7: 6449273-6462574 Capsella rubella
Carub.0007s1730 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 6452575-6462574 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363554 5261 Brassicaceae View MSA
123831492 5264 Brassicales-Malvales View MSA
124341690 5266 SBM View MSA
124240679 5268 Malvidae View MSA
124068790 5270 Rosid View MSA
123750748 5271 Pentapetalae View MSA
122786730 5272 Eudicot View MSA
122043550 5273 Angiosperm View MSA
121310146 5274 Embryophyte View MSA
123347715 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain