Gene : Carub.0007s1294 C. rubella v1.1
Defline:  (1 of 4) PTHR10315//PTHR10315:SF34 - SEVEN IN ABSENTIA HOMOLOG // E3 UBIQUITIN-PROTEIN LIGASE SINAT3-RELATED Genomic Order:  1294
Name:  ? Carub.0007s1294 Secondary Identifier:  ? PAC:39234864
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Crubella PWY-7511 Capsella rubella pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

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Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Carub.0007s1294 0.5kb upstream 0.5kb upstream 2324 true scaffold_7: 4898859-4901182 Capsella rubella
Carub.0007s1294 0.5kb upstream 0.5kb upstream 500 false scaffold_7: 4900683-4901182 Capsella rubella
Carub.0007s1294 0.5kb downstream 0.5kb downstream 2324 true scaffold_7: 4898359-4900682 Capsella rubella
Carub.0007s1294 0.5kb downstream 0.5kb downstream 500 false scaffold_7: 4898359-4898858 Capsella rubella
Carub.0007s1294 1.0kb upstream 1.0kb upstream 2824 true scaffold_7: 4898859-4901682 Capsella rubella
Carub.0007s1294 1.0kb upstream 1.0kb upstream 1000 false scaffold_7: 4900683-4901682 Capsella rubella
Carub.0007s1294 1.0kb downstream 1.0kb downstream 2824 true scaffold_7: 4897859-4900682 Capsella rubella
Carub.0007s1294 1.0kb downstream 1.0kb downstream 1000 false scaffold_7: 4897859-4898858 Capsella rubella
Carub.0007s1294 2.0kb upstream 2.0kb upstream 3824 true scaffold_7: 4898859-4902682 Capsella rubella
Carub.0007s1294 2.0kb upstream 2.0kb upstream 2000 false scaffold_7: 4900683-4902682 Capsella rubella
Carub.0007s1294 2.0kb downstream 2.0kb downstream 3824 true scaffold_7: 4896859-4900682 Capsella rubella
Carub.0007s1294 2.0kb downstream 2.0kb downstream 2000 false scaffold_7: 4896859-4898858 Capsella rubella
Carub.0007s1294 5.0kb upstream 5.0kb upstream 6824 true scaffold_7: 4898859-4905682 Capsella rubella
Carub.0007s1294 5.0kb upstream 5.0kb upstream 5000 false scaffold_7: 4900683-4905682 Capsella rubella
Carub.0007s1294 5.0kb downstream 5.0kb downstream 6824 true scaffold_7: 4893859-4900682 Capsella rubella
Carub.0007s1294 5.0kb downstream 5.0kb downstream 5000 false scaffold_7: 4893859-4898858 Capsella rubella
Carub.0007s1294 10.0kb upstream 10.0kb upstream 11824 true scaffold_7: 4898859-4910682 Capsella rubella
Carub.0007s1294 10.0kb upstream 10.0kb upstream 10000 false scaffold_7: 4900683-4910682 Capsella rubella
Carub.0007s1294 10.0kb downstream 10.0kb downstream 11824 true scaffold_7: 4888859-4900682 Capsella rubella
Carub.0007s1294 10.0kb downstream 10.0kb downstream 10000 false scaffold_7: 4888859-4898858 Capsella rubella

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369090 5261 Brassicaceae View MSA
123832922 5264 Brassicales-Malvales View MSA
124341271 5266 SBM View MSA
124251160 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain